Co-expression analysis

Gene ID Os03g0144300
Gene name
Homology with ArabidopsisSimilar to At2g20370: MUR3 (MURUS 3) (HF=2e-1)
Module size 14 genes
NF 0.38
%ile 44.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7793.10.86Os03g0144300AK073950.1-Exostosin-like family protein2e-1At2g20370MUR3 (MURUS 3)O.I.H.G.S.X.
0.5573.70.90Os01g0248000AK073588.1-Stigma-specific protein Stig1 family protein5e-1At1g67035unknown proteinO.I.H.G.S.X.
0.5269.60.88Os02g0252200AK063943.1-No apical meristem (NAM) protein domain containingprotein9e-10At1g79580SMB (SOMBRERO)O.I.H.G.S.X.
0.4964.40.90Os07g01044009635.m00042-Haem peroxidase, plant/fungal/bacterial familyprotein2e-3At5g40150peroxidase, putativeO.I.H.G.S.X.
0.4660.90.91Os01g0653200AK110920.1-Glycosyl transferase, group 1 domain containingprotein9e-1At1g71910unknown proteinO.I.H.G.S.X.
0.4458.10.89Os02g04480009630.m02338-Protein of unknown function DUF296 domaincontaining protein8e-6At4g22810DNA-binding protein-relatedO.I.H.G.S.X.
0.4051.10.87Os01g06769009629.m04673-Conserved hypothetical protein1e+0At5g56550OXS3 (OXIDATIVE STRESS 3)O.I.H.G.S.X.
0.3846.90.93Os12g0640700AK108649.1-N/apple PAN domain containing protein8e-1At5g44500small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putativeO.I.H.G.S.X.
0.3338.80.88Os12g0120500AK103389.1-Protein of unknown function DUF567 family protein3e-2At5g18540unknown proteinO.I.H.G.S.X.
0.2727.50.89Os09g0420300AK120582.1-Methyladenine glycosylase family protein1e-5At1g80850methyladenine glycosylase family proteinO.I.H.G.S.X.
0.2727.50.90Os06g0543200AK073606.1-CDPK substrate protein 15e-15At2g38300DNA binding / transcription factorO.I.H.G.S.X.
0.2321.20.89Os06g0294200AK119403.1-Hypothetical protein4e-1At4g34600unknown proteinO.I.H.G.S.X.
0.2016.50.89Os03g0144500AK122034.1-The start codon is not identified.1e-2At2g20370MUR3 (MURUS 3)O.I.H.G.S.X.
0.1712.60.89Os01g0216500NM_188456.1-Lipolytic enzyme, G-D-S-L family protein2e-6At1g28600lipase, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.199.2GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
20.099.1GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.399.0GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.399.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.998.9GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.898.9GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.498.9GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.498.9GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.798.8GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.698.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1142GO:0009987Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.Link to AmiGO
0.0381GO:0006281The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.Link to AmiGO
0.0141GO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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