CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0131300

Gene name
Homology with Arabidopsis Similar to At2g17200: ubiquitin family protein (HF=5e-12)

Module size 8 genes

NF 0.14

%ile 11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.94 Os03g0131300 AK100656.1 - Ubiquitin domain containing protein 5e-12 At2g17200 ubiquitin family protein O.I. H.G. S.X.
0.43 55.4 0.95 Os06g0583400 AF513382.1 - Histone deacetylase HDAC1 6e-61 At4g38130 HD1 (HISTONE DEACETYLASE 1) O.I. H.G. S.X.
0.31 34.5 0.96 Os03g0261500 AK064904.1 - Heat shock protein DnaJ family protein 3e-9 At5g22080 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.17 12.6 0.95 Os01g0258700 AK111633.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 5e-6 At2g47850 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.12 7.2 0.95 Os05g0295800 AK070232.1 - Glyoxalase I (EC 4.4.1.5) 2e-10 At1g08110 lactoylglutathione lyase, putative / glyoxalase I, putative O.I. H.G. S.X.
0.11 6.5 0.95 Os04g0531700 AK119481.1 - Glucose/ribitol dehydrogenase family protein 4e+0 At4g23430 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.09 4.9 0.95 Os03g0747200 AK102631.1 - Conserved hypothetical protein 6e-2 At1g20050 HYD1 (HYDRA1) O.I. H.G. S.X.
0.08 4.2 0.95 Os09g0482400 D21284.1 - Heat shock protein 82 4e+0 At5g45360 F-box family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
49.3 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.0 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.200 1 GO:0016575 The modification of histones by removal of acetyl groups.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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