Co-expression analysis

Gene ID Os03g0126000
Gene name
Homology with ArabidopsisSimilar to At5g17990: TRP1 (tryptophan biosynthesis 1) (HF=8e-1)
Module size 7 genes
NF 0.08
%ile 6.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6181.20.85Os03g0126000AK121680.1-Glycosyl transferase, family 3 domain containingprotein8e-1At5g17990TRP1 (tryptophan biosynthesis 1)O.I.H.G.S.X.
0.4051.10.85Os09g0467200AF402804.1-Probable glutathione S-transferase (EC 2.5.1.18)(Auxin-induced protein PGNT1/PCNT110)5e-1At2g07772unknown proteinO.I.H.G.S.X.
0.4051.10.87Os10g0469700AK066165.1-Leucine-rich repeat, cysteine-containing typecontaining protein2e-1At5g4793040S ribosomal protein S27 (RPS27D)O.I.H.G.S.X.
0.2117.90.84Os06g0288100AK068504.1-Receptor-like protein kinase4e+0At5g61350protein kinase family proteinO.I.H.G.S.X.
0.063.00.85Os04g0655300AK103700.1-Protein kinase domain containing protein9e-5At3g19700IKU2 (HAIKU2)O.I.H.G.S.X.
0.052.50.85Os04g0105100AK071063.1-Zn-finger, RING domain containing protein2e-7At3g09760zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.031.40.84Os03g0150600AK070341.1-High affinity phosphate transporter 2 (Phosphatetransporter)2e-22At2g32830PHT5O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.799.9GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
41.999.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.597.9GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.597.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.397.5GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.397.5GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.397.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.397.5GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.097.4GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.997.3GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2221GO:0000162The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate.Link to AmiGO
0.1251GO:0006817The directed movement of phosphate into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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