CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0118100

Gene name
Homology with Arabidopsis Similar to At4g15460: glycine-rich protein (HF=2e-1)

Module size 6 genes

NF 0.07

%ile 4.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.97 Os03g0118100 AK072029.1 - Conserved hypothetical protein 2e-1 At4g15460 glycine-rich protein O.I. H.G. S.X.
0.44 58.1 0.97 Os09g0433500 9637.m02294 - Glycosyl transferase, family 31 protein 5e-1 At3g29300 unknown protein O.I. H.G. S.X.
0.15 10.3 0.97 Os10g0476500 AK110990.1 - Conserved hypothetical protein 1e-2 At1g62240 unknown protein O.I. H.G. S.X.
0.10 5.7 0.97 Os04g0551500 AK068749.1 - SBP domain containing protein 3e-3 At3g06410 nucleic acid binding / zinc ion binding O.I. H.G. S.X.
0.07 3.7 0.97 Os04g0456600 9632.m03621 - - 1e+0 At5g04386 unknown protein O.I. H.G. S.X.
0.02 1.0 0.97 Os03g0558300 NM_184682.1 - - 3e+0 At1g64640 plastocyanin-like domain-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.8 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.5 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.6 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM159173 Rice coleoptiles, 4 days old, aerobic, replicate N.2 (sample#10) GSE6908 Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile
8.1 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.9 97.6 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.071 1 GO:0006099 A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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