Co-expression analysis

Gene ID Os03g0111200
Gene name
Homology with ArabidopsisSimilar to At1g60989: SCRL7 (SCR-Like 7) (HF=5e-1)
Module size 6 genes
NF 0.54
%ile 72.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5068.00.91Os03g0111200AK060379.1-Remorin5e-1At1g60989SCRL7 (SCR-Like 7)O.I.H.G.S.X.
0.8395.80.91Os01g0971400AK105881.1-Cysteine proteinase1e-2At1g20850XCP2 (xylem cysteine peptidase 2)O.I.H.G.S.X.
0.6787.20.93Os07g0104100AK107894.1-Peroxidase 27 precursor (EC 1.11.1.7) (AtperoxP27) (PRXR7) (ATP12a)5e-2At1g44970peroxidase, putativeO.I.H.G.S.X.
0.5573.70.91Os03g0793800AK061537.1-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein8e+0At5g23100unknown proteinO.I.H.G.S.X.
0.3134.50.93Os05g0108600AK106508.1-Cysteine proteinase1e-11At1g20850XCP2 (xylem cysteine peptidase 2)O.I.H.G.S.X.
0.2524.10.91Os04g0613700AK105086.1-The start codon is not identified.1e-3At2g35020UTP--glucose-1-phosphate uridylyltransferase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.997.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.197.4GSM159220Seed (S5, 21 - 29 dap), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
6.197.1GSM159216Seed (S4, 11 - 20 dap), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
6.197.1GSM159218Seed (S4, 11 - 20 dap), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
6.097.0GSM159217Seed (S4, 11 - 20 dap), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
5.997.0GSM159221Seed (S5, 21 - 29 dap), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
5.296.7GSM159219Seed (S5, 21 - 29 dap), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
4.496.2GSM159214Seed (S3, 5 - 10 dap), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
4.396.1GSM159215Seed (S3, 5 - 10 dap), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
4.196.0GSM240994Zhonghua11 7 DAF, biological replicate 1GSE9498Global gene expression profiles of Oryza sativa wild type Zhonghua11 and mutant gif1 in filling stageLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0221GO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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