CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os03g0109300

Gene name
Homology with Arabidopsis Similar to At2g28305: unknown protein (HF=1e-17)

Module size 6 genes

NF 0.06

%ile 3.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.80 Os03g0109300 AK099538.1 - Conserved hypothetical protein 730 family protein 1e-17 At2g28305 unknown protein O.I. H.G. S.X.
0.25 24.1 0.88 Os02g0670900 AK100650.1 - Amino acid transporter protein-like 2e-52 At1g20090 ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) O.I. H.G. S.X.
0.18 13.7 0.90 Os04g0623300 CB618007 - Flavin-containing amine oxidase family protein 2e-18 At2g43020 ATPAO2 (Polyamine oxidase 2) O.I. H.G. S.X.
0.11 6.5 0.90 Os04g0558400 AK061440.1 - Acyl-CoA thioesterase family protein 6e-5 At4g00520 - O.I. H.G. S.X.
0.03 1.4 0.90 Os09g0421500 AK070023.1 - Conserved hypothetical protein 3e-3 At2g23320 WRKY15 O.I. H.G. S.X.
0.02 1.0 0.90 Os06g0681700 AK104993.2 - Conserved hypothetical protein 1e+0 At3g07080 membrane protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.2 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
24.6 99.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.1 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.6 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.5 97.5 GSM255762 wt collar chip GSE12097 antiOsLIC collar chip
7.0 97.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.042 1 GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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