CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0830100

Gene name
Homology with Arabidopsis Similar to At5g65620: peptidase M3 family protein / thimet oligopeptidase family protein (HF=7e-24)

Module size 6 genes

NF 0.59

%ile 80.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.95 Os02g0830100 AK065077.1 - Oligopeptidase A 7e-24 At5g65620 peptidase M3 family protein / thimet oligopeptidase family protein O.I. H.G. S.X.
0.80 94.6 0.94 Os10g0363600 AK111523.1 - Cyclin-like F-box domain containing protein 4e-3 At1g22040 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.50 68.0 0.94 Os10g0502500 AK061824.1 - Cytochrome b5 domain containing protein 4e-14 At3g48890 ATMP2 O.I. H.G. S.X.
0.50 68.0 0.96 Os08g0562700 AK066773.1 - Aminopeptidase N 4e-44 At1g63770 peptidase M1 family protein O.I. H.G. S.X.
0.44 58.1 0.95 Os06g0728500 AK099928.1 - Hypothetical protein 2e-2 At1g70190 ribosomal protein L12 family protein O.I. H.G. S.X.
0.36 44.0 0.96 Os02g0773300 AK071811.1 - Pyridoxal phosphate-dependent deaminase familyprotein 3e-12 At1g48420 D-CDES (D-CYSTEINE DESULFHYDRASE) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.3 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.2 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.039 1 GO:0006520 The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents.

Inter-species module comparison

A co-expression module including the maize gene, Zm.3613.1.A1_at, orthologous to the query gene, Os02g0830100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 Zm.3613.1.A1_at At5g65620 hypothetical protein LOC100273532 - 4e-24 At5g10540 peptidase M3 family protein / thimet oligopeptidase family protein O.I. H.G. S.X.
0.67 85.8 Zm.17556.1.S1_at At5g65620 hypothetical protein LOC100191272 - 1e-4 At5g36700 PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1) O.I. H.G. S.X.
0.67 85.8 Zm.4164.4.A1_a_at At5g65620 - - 3e+1 At5g53180 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) O.I. H.G. S.X.
0.60 77.8 Zm.1937.1.S1_at At5g65620 hypothetical protein LOC100277662 - 5e+0 At3g50800 unknown protein O.I. H.G. S.X.
0.57 75.1 Zm.564.1.S1_a_at At5g65620 glutathione S-transferase GST 39 - 3e-2 At2g36640 ATECP63 (EMBRYONIC CELL PROTEIN 63) O.I. H.G. S.X.
0.53 69.1 Zm.4467.1.S1_a_at At5g65620 hypothetical protein LOC100193777 - 1e-5 At1g36280 adenylosuccinate lyase, putative / adenylosuccinase, putative O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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