CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0830100

Gene name
Homology with Arabidopsis Similar to At5g65620: peptidase M3 family protein / thimet oligopeptidase family protein (HF=7e-24)

Module size 6 genes

NF 0.59

%ile 80.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.95 Os02g0830100 AK065077.1 - Oligopeptidase A 7e-24 At5g65620 peptidase M3 family protein / thimet oligopeptidase family protein O.I. H.G. S.X.
0.80 94.6 0.94 Os10g0363600 AK111523.1 - Cyclin-like F-box domain containing protein 4e-3 At1g22040 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.50 68.0 0.94 Os10g0502500 AK061824.1 - Cytochrome b5 domain containing protein 4e-14 At3g48890 ATMP2 O.I. H.G. S.X.
0.50 68.0 0.96 Os08g0562700 AK066773.1 - Aminopeptidase N 4e-44 At1g63770 peptidase M1 family protein O.I. H.G. S.X.
0.44 58.1 0.95 Os06g0728500 AK099928.1 - Hypothetical protein 2e-2 At1g70190 ribosomal protein L12 family protein O.I. H.G. S.X.
0.36 44.0 0.96 Os02g0773300 AK071811.1 - Pyridoxal phosphate-dependent deaminase familyprotein 3e-12 At1g48420 D-CDES (D-CYSTEINE DESULFHYDRASE) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.3 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.2 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.039 1 GO:0006520 The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents.

Inter-species module comparison

A co-expression module including the barley gene, Contig4070_s_at, orthologous to the query gene, Os02g0830100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 87.4 Contig4070_s_at At5g65620 - - 4e-22 At5g65620 peptidase M3 family protein / thimet oligopeptidase family protein O.I. H.G. S.X.
0.70 86.0 Contig3243_x_at At5g65620 - - 6e-4 At1g44970 peroxidase, putative O.I. H.G. S.X.
0.65 81.4 Contig13430_s_at At5g65620 - - 6e-5 At5g21930 PAA2 (P-TYPE ATPASE OF ARABIDOPSIS 2) O.I. H.G. S.X.
0.63 80.3 Contig18185_at At5g65620 - - 5e+0 At2g30120 unknown protein O.I. H.G. S.X.
0.58 74.9 Contig16002_at At5g65620 - - 2e+0 At4g31800 WRKY18 O.I. H.G. S.X.
0.56 74.3 Contig23438_at At5g65620 - - 2e+0 At1g57860 60S ribosomal protein L21 O.I. H.G. S.X.
0.54 70.3 Contig14534_at At5g65620 - - 7e-1 At1g64930 CYP89A7 O.I. H.G. S.X.
0.52 68.3 Contig14535_at At5g65620 - - 5e-1 At1g08830 CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) O.I. H.G. S.X.
0.48 63.2 Contig3923_at At5g65620 - - 4e-1 At3g04460 PEX12 O.I. H.G. S.X.
0.47 62.2 Contig13661_at At5g65620 - - 2e+0 At2g32885 - O.I. H.G. S.X.
0.46 61.0 Contig19788_at At5g65620 - - 3e-1 At4g26840 SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) O.I. H.G. S.X.
0.46 61.0 Contig22688_at At5g65620 - - 2e+0 At2g01860 EMB975 (EMBRYO DEFECTIVE 975) O.I. H.G. S.X.
0.44 58.9 HI02E24u_s_at At5g65620 - - 8e-36 At2g36620 RPL24A (ribosomal protein L24) O.I. H.G. S.X.
0.41 53.9 Contig18195_at At5g65620 - - 7e+0 At3g56500 serine-rich protein-related O.I. H.G. S.X.
0.36 47.1 Contig20936_at At5g65620 - - 3e-5 At3g21175 ZML1 (ZIM-LIKE 1) O.I. H.G. S.X.
0.34 43.6 HS18F06u_s_at At5g65620 - - 7e-14 At2g47610 60S ribosomal protein L7A (RPL7aA) O.I. H.G. S.X.
0.33 42.6 HY09M22u_s_at At5g65620 - - 3e+0 At2g04378 beta-galactosidase O.I. H.G. S.X.
0.32 40.3 Contig16972_at At5g65620 - - 5e-10 At5g64813 LIP1 (Light Insensitive Period1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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