CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0830100

Gene name
Homology with Arabidopsis Similar to At5g65620: peptidase M3 family protein / thimet oligopeptidase family protein (HF=7e-24)

Module size 6 genes

NF 0.59

%ile 80.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.95 Os02g0830100 AK065077.1 - Oligopeptidase A 7e-24 At5g65620 peptidase M3 family protein / thimet oligopeptidase family protein O.I. H.G. S.X.
0.80 94.6 0.94 Os10g0363600 AK111523.1 - Cyclin-like F-box domain containing protein 4e-3 At1g22040 kelch repeat-containing F-box family protein O.I. H.G. S.X.
0.50 68.0 0.94 Os10g0502500 AK061824.1 - Cytochrome b5 domain containing protein 4e-14 At3g48890 ATMP2 O.I. H.G. S.X.
0.50 68.0 0.96 Os08g0562700 AK066773.1 - Aminopeptidase N 4e-44 At1g63770 peptidase M1 family protein O.I. H.G. S.X.
0.44 58.1 0.95 Os06g0728500 AK099928.1 - Hypothetical protein 2e-2 At1g70190 ribosomal protein L12 family protein O.I. H.G. S.X.
0.36 44.0 0.96 Os02g0773300 AK071811.1 - Pyridoxal phosphate-dependent deaminase familyprotein 3e-12 At1g48420 D-CDES (D-CYSTEINE DESULFHYDRASE) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.3 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.2 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.039 1 GO:0006520 The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents.

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g65620, orthologous to the query gene, Os02g0830100

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At5g65620 836688 peptidase M3 family protein / thimet oligopeptidase family protein F:metalloendopeptidase activity;P:proteolysis;C:cytosol, chloroplast, chloroplast stroma;BOFMPA O.I. H.G. S.X.
0.50 65.3 At1g65410 842852 ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11) member of NAP subfamily O.I. H.G. S.X.
0.40 50.8 At3g01910 820118 SOX (SULFITE OXIDASE) Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite. O.I. H.G. S.X.
0.33 38.1 At5g06580 830546 FAD linked oxidase family protein Encodes a protein with glycolate dehydrogenase activity, which was shown to complement various subunits of the E. coli glycolate oxidase complex. It has not been ruled out that the enzyme might be involved in other catalytic activities in vivo. O.I. H.G. S.X.
0.25 22.6 At1g79870 844326 oxidoreductase family protein F:in 6 functions;P:metabolic process;C:unknown;BOFMPAV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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