Co-expression analysis

Gene ID	Os02g0824300
Gene name
Homology with Arabidopsis	Similar to At5g46640: DNA-binding family protein (HF=3e-4)
Module size	7 genes
NF	0.58
%ile	78.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	78.0	0.95	Os02g0824300	AK066031.1	-	HMG-I and HMG-Y, DNA-binding domain containingprotein	3e-4	At5g46640	DNA-binding family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.71	89.6	0.96	Os04g0641000	AK121416.1	-	RNA polymerase beta subunit domain containingprotein	2e-22	At3g23780	NRPD2A	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.95	Os01g0600300	AK102895.1	-	Conserved hypothetical protein	1e+0	At2g27390	proline-rich family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	0.95	Os01g0367900	AK105265.1	-	DNA-dependent ATPase SNF2H	1e-103	At3g06400	CHR11 (CHROMATIN-REMODELING PROTEIN 11)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	0.95	Os04g0151800	AK065274.1	-	Argonaute and Dicer protein, PAZ domain containingprotein	2e-12	At2g27040	AGO4 (ARGONAUTE 4)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.95	Os05g0509300	AK066384.1	-	contains InterPro domain(s): IPR001656	4e-10	At3g04820	pseudouridine synthase	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.37	45.0	0.95	Os02g0217500	AK058267.1	-	Pre-mRNA cleavage complex II Clp1 family protein	1e-2	At3g04680	CLPS3 (CLP-SIMILAR PROTEIN 3)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.6	98.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6	98.4	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2	98.2	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.1	98.2	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7	98.1	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5	98.1	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0	98.0	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO
0.167	1	GO:0006461	The aggregation, arrangement and bonding together of a set of components to form a protein complex.
0.100	1	GO:0008033	The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
0.048	1	GO:0006350	The synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

A co-expression module including the grape gene, 1608738_at, orthologous to the query gene, Os02g0824300

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	1608738_at	At5g46640	hypothetical protein LOC100265498	-	8e-11	At3g61310	DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1611183_at	At5g46640	hypothetical protein LOC100263273	-	6e-63	At3g55770	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1617441_at	At5g46640	hypothetical protein LOC100246691	-	1e-13	At3g51850	CPK13	O.I.	H.G.	S.X.	Please select
0.50	72.7	1622676_s_at	At5g46640	hypothetical protein LOC100247010	-	3e-16	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1621792_at	At5g46640	hypothetical protein LOC100249673	-	1e-3	At1g75080	BZR1 (BRASSINAZOLE-RESISTANT 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1606958_s_at	At5g46640	hypothetical protein LOC100253241	-	6e-38	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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