Co-expression analysis

Gene ID Os02g0824300
Gene name
Homology with ArabidopsisSimilar to At5g46640: DNA-binding family protein (HF=3e-4)
Module size 7 genes
NF 0.58
%ile 78.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5978.00.95Os02g0824300AK066031.1-HMG-I and HMG-Y, DNA-binding domain containingprotein3e-4At5g46640DNA-binding family proteinO.I.H.G.S.X.
0.7189.60.96Os04g0641000AK121416.1-RNA polymerase beta subunit domain containingprotein2e-22At3g23780NRPD2AO.I.H.G.S.X.
0.6787.20.95Os01g0600300AK102895.1-Conserved hypothetical protein1e+0At2g27390proline-rich family proteinO.I.H.G.S.X.
0.6079.70.95Os01g0367900AK105265.1-DNA-dependent ATPase SNF2H1e-103At3g06400CHR11 (CHROMATIN-REMODELING PROTEIN 11)O.I.H.G.S.X.
0.5371.30.95Os04g0151800AK065274.1-Argonaute and Dicer protein, PAZ domain containingprotein2e-12At2g27040AGO4 (ARGONAUTE 4)O.I.H.G.S.X.
0.5068.00.95Os05g0509300AK066384.1-contains InterPro domain(s): IPR0016564e-10At3g04820pseudouridine synthaseO.I.H.G.S.X.
0.3745.00.95Os02g0217500AK058267.1-Pre-mRNA cleavage complex II Clp1 family protein1e-2At3g04680CLPS3 (CLP-SIMILAR PROTEIN 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.698.6GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.398.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.698.4GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.498.3GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.298.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.198.2GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.798.1GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.598.1GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.098.0GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.597.9GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1671GO:0006461The aggregation, arrangement and bonding together of a set of components to form a protein complex.Link to AmiGO
0.1001GO:0008033The process by which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.Link to AmiGO
0.0481GO:0006350The synthesis of either RNA on a template of DNA or DNA on a template of RNA.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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