Co-expression analysis

Gene ID	Os02g0822400
Gene name
Homology with Arabidopsis	Similar to At5g09330: anac082 (Arabidopsis NAC domain containing protein 82) (HF=5e-3)
Module size	6 genes
NF	0.55
%ile	74.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.33	38.8	0.96	Os02g0822400	AK062258.1	-	No apical meristem (NAM) protein domain containingprotein	5e-3	At5g09330	anac082 (Arabidopsis NAC domain containing protein 82)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.77	93.1	0.96	Os04g0517400	AK059571.1	-	Conserved hypothetical protein	5e-15	At5g18480	PGSIP6 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 6)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.67	87.2	0.96	Os02g0581300	AK071553.1	-	ASC1 (Alternaria stem canker resistance protein)	5e-8	At3g25540	LAG1	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	0.97	Os09g0281700	X59276.1	-	Ras-related protein RGP1 (GTP-binding regulatoryprotein RGP1)	1e-17	At5g47960	ATRABA4C	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.55	73.7	0.96	Os10g0577800	AK121290.1	-	Conserved hypothetical protein	3e-1	At4g34080	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.48	63.7	0.96	Os06g0714200	BM419528	-	Calcium/calmodulin-dependent protein kinasehomolog|CaM kinase homolog|MCK1 protein	8e-19	At2g46700	calcium-dependent protein kinase, putative / CDPK, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.8	97.3	GSM275411	Azucena root tip_Buckled at the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.9	97.0	GSM275405	Azucena root tip_At the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
5.8	97.0	GSM275413	Azucena root tip_Buckled at the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.5	96.3	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
4.2	96.0	GSM275412	Azucena root tip Buckled at the wax layer_rep2	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
4.0	95.9	GSM275414	Azucena root tip_Before the wax layer_rep1	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.2	94.9	GSM275416	Azucena root tip_Before the wax layer_Rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
3.0	94.6	GSM275407	Azucena root tip_At the wax layer_rep3	GSE10857	Gene expression of rice root tips before, at and buckled by a hard layer in two rice varieties
2.7	94.1	GSM100441	Rice Azucena 1ppm Arsenate Rep1	GSE4471	Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
2.6	93.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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