Co-expression analysis

Gene ID Os02g0822100
Gene name
Homology with ArabidopsisSimilar to At1g02260: transmembrane protein, putative (HF=1e-3)
Module size 6 genes
NF 0.41
%ile 51.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.91Os02g0822100AK065330.1-Arsenical pump membrane protein family protein1e-3At1g02260transmembrane protein, putativeO.I.H.G.S.X.
0.5573.70.91Os12g0223300AK060133.1-Cytochrome b5 domain containing protein3e-11At5g48810CB5-D (CYTOCHROME B5 ISOFORM D)O.I.H.G.S.X.
0.4051.10.95Os08g0269800AK120307.1-Leucine-rich repeat, cysteine-containingcontaining protein2e+0At4g39260GR-RBP8O.I.H.G.S.X.
0.2931.10.93Os10g0375700AK068318.1-Hypothetical protein3e-1At1g78210hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.2931.10.95Os01g0662600AK119723.1-ISCU11e-4At3g01020ISU2 (ISCU-LIKE 2)O.I.H.G.S.X.
0.1915.10.95Os02g0649700AK069509.1-Peptidase M41, FtsH extracellular domaincontaining protein6e-34At3g47060ftsh7 (FtsH protease 7)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
55.599.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
24.999.5GSM35713314-day-old seedling, rep 2GSE14275Expression data for heat shock in rice seedlingsLink to GEO
20.499.1GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
6.197.1GSM35713414-day-old seedling, rep 3GSE14275Expression data for heat shock in rice seedlingsLink to GEO
5.997.0GSM35712214-day-old seedling, rep 1GSE14275Expression data for heat shock in rice seedlingsLink to GEO
3.294.9GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
3.294.9GSM159185Y Leaf, biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
2.794.1GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
2.493.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
2.393.0GSM159184Y Leaf, biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1541GO:0030163The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.Link to AmiGO
0.0631GO:0006725The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage