CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0792900

Gene name
Homology with Arabidopsis Similar to At1g16180: TMS membrane family protein / tumour differentially expressed (TDE) family protein (HF=1e-15)

Module size 7 genes

NF 0.77

%ile 97.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.98 Os02g0792900 AK068367.1 - TMS membrane protein/tumour differentiallyexpressed protein family protein 1e-15 At1g16180 TMS membrane family protein / tumour differentially expressed (TDE) family protein O.I. H.G. S.X.
0.75 91.9 0.97 Os09g0394900 AK061821.1 - Annexin-like protein 3e+0 At5g23640 unknown protein O.I. H.G. S.X.
0.75 91.9 0.98 Os07g0512200 CF292921 - Symbiosis-related like protein 2e-40 At4g21980 APG8A (AUTOPHAGY 8A) O.I. H.G. S.X.
0.75 91.9 0.98 Os01g0707300 AK104463.1 - Vesicle transport v-SNARE family protein 6e-7 At3g29100 VTI13 O.I. H.G. S.X.
0.67 87.2 0.98 Os05g0402300 AK070043.1 - Protein of unknown function UPF0005 family protein 9e-3 At4g15470 - O.I. H.G. S.X.
0.60 79.7 0.98 Os09g0512900 AK104595.1 - Conserved hypothetical protein 7e-19 At5g11680 unknown protein O.I. H.G. S.X.
0.60 79.7 0.98 Os05g0409300 AK065214.1 - Cysteine protease inhibitor cystatin (Fragment) 2e+0 At2g20260 PSAE-2 (photosystem I subunit E-2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.9 99.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.4 98.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.1 98.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.5 97.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
6.3 97.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.2 96.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9 96.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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