Co-expression analysis

Gene ID Os02g0790500
Gene name
Homology with ArabidopsisSimilar to At1g68020: ATTPS6 (HF=3e-11)
Module size 6 genes
NF 0.56
%ile 75.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5978.00.90Os02g0790500AK066691.1-Glycosyl transferase, family 20 domain containingprotein3e-11At1g68020ATTPS6O.I.H.G.S.X.
0.7391.10.90Os04g0674000AK119671.1-Conserved hypothetical protein7e-1At4g16240unknown proteinO.I.H.G.S.X.
0.5777.00.92Os09g0486500AF140722.2-Multiple stress-responsive zinc-finger protein(Multiple stress- associated zinc-finger protein)2e+0At5g24290integral membrane family proteinO.I.H.G.S.X.
0.5371.30.92Os04g05435009632.m04421-Homeodomain-like containing protein2e+0At2g44730transcription factorO.I.H.G.S.X.
0.4660.90.90Os01g0667900AK105335.1-Glutaredoxin domain containing protein2e+0At4g38140zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3134.50.92Os03g0761100AK066083.1-Protein phosphatase 2C-like protein6e-8At4g33920protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.798.4GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
10.698.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.498.1GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.397.9GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.097.8GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.897.8GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.297.7GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1051GO:0005992The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.Link to AmiGO
0.0411GO:0006418The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.Link to AmiGO
0.0381GO:0006470The process of removing one or more phosphoric residues from a protein.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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