CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0786300

Gene name
Homology with Arabidopsis Similar to At4g37780: MYB87 (MYB DOMAIN PROTEIN 87) (HF=2e-17)

Module size 7 genes

NF 0.41

%ile 49.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.92 Os02g0786300 9630.m05407 - Typical P-type R2R3 Myb protein (Fragment) 2e-17 At4g37780 MYB87 (MYB DOMAIN PROTEIN 87) O.I. H.G. S.X.
0.57 77.0 0.92 Os02g0767400 AK072314.1 - Curculin-like (mannose-binding) lectin domaincontaining protein 4e-7 At5g35370 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding O.I. H.G. S.X.
0.53 71.3 0.92 Os01g0536400 NM_193243.1 - Isopenicillin N synthase family protein 2e+0 At3g28950 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related O.I. H.G. S.X.
0.41 52.4 0.90 Os06g0294200 AK119403.1 - Hypothetical protein 4e-1 At4g34600 unknown protein O.I. H.G. S.X.
0.33 38.8 0.94 Os02g0814500 9630.m05656 - Phosphate starvation regulator protein (Regulatoryprotein of P- starvation acclimation response Psr1) 5e-1 At3g13040 myb family transcription factor O.I. H.G. S.X.
0.33 38.8 0.94 Os01g0859500 AK101338.1 - Ocs-element binding factor 3.2 3e-4 At5g07600 oleosin / glycine-rich protein O.I. H.G. S.X.
0.13 8.2 0.92 Os01g0641800 9629.m04342 - AAA ATPase, central region domain containingprotein 5e-2 At3g55460 SCL30 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.0 99.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.3 97.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.4 97.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.087 1 GO:0017000 The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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