Co-expression analysis

Gene ID Os02g0782700
Gene name
Homology with ArabidopsisSimilar to At3g14230: RAP2.2 (HF=2e-14)
Module size 10 genes
NF 0.53
%ile 71.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5068.00.96Os02g0782700AF193803.1-Transcription factor EREBP12e-14At3g14230RAP2.2O.I.H.G.S.X.
0.7189.60.97Os04g0464500AK069067.1-UBX domain containing protein7e-4At4g22150PUX3O.I.H.G.S.X.
0.6787.20.97Os01g0857700AK066959.1-Cell cycle control protein cwf142e-19At4g21110G10 family proteinO.I.H.G.S.X.
0.6787.20.97Os06g0264300AK061556.1-UV excision repair protein Rad23 family protein1e-12At3g02540RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)O.I.H.G.S.X.
0.6483.40.97Os03g0852200AK068059.1-Der1-like domain containing protein4e-30At4g21810DER2.1 (DERLIN-2.1)O.I.H.G.S.X.
0.5371.30.97Os03g0784900AK060949.1-Conserved hypothetical protein1e-1At2g34690ACD11 (ACCELERATED CELL DEATH 11)O.I.H.G.S.X.
0.4863.70.97Os10g0397200CA759319-Winged helix DNA-binding domain containing protein4e-1Atcg01070-O.I.H.G.S.X.
0.3644.00.97Os11g0433200AK067867.1-Peptidase A22B, minor histocompatibility antigenH13 family protein5e-3At1g01650aspartic-type endopeptidase/ peptidaseO.I.H.G.S.X.
0.3541.70.97Os06g0106100AK112060.1-Cwf15/Cwc15 cell cycle control protein familyprotein6e-10At3g13200EMB2769 (EMBRYO DEFECTIVE 2769)O.I.H.G.S.X.
0.3236.30.97Os02g0803700AK103936.1-26S protease regulatory subunit 6A homolog(TAT-binding protein homolog 1) (TBP-1)7e-72At3g05530RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.398.4GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.098.3GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.898.3GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.398.2GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.398.2GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.198.2GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.198.0GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0951GO:0006289A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts).Link to AmiGO
0.0321GO:0006464The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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