Co-expression analysis

Gene ID Os02g0765400
Gene name
Homology with ArabidopsisSimilar to At4g00850: GIF3 (GRF1-INTERACTING FACTOR 3) (HF=1e+0)
Module size 7 genes
NF 0.59
%ile 79.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6079.70.82Os02g0765400CF306714-Alpha-amylase precursor (EC 3.2.1.1)(1,4-alpha-D-glucan glucanohydrolase) (Isozyme 1B)1e+0At4g00850GIF3 (GRF1-INTERACTING FACTOR 3)O.I.H.G.S.X.
0.8094.60.62Os02g0765300CF306714-Alpha-amylase precursor (EC 3.2.1.1)(1,4-alpha-D-glucan glucanohydrolase) (Isozyme 1B)1e+0At4g00850GIF3 (GRF1-INTERACTING FACTOR 3)O.I.H.G.S.X.
0.4660.90.57Os02g0765600NM_193986.1-Alpha-amylase precursor (EC 3.2.1.1)(1,4-alpha-D-glucan glucanohydrolase) (Isozyme 1B)1e+1At4g15790unknown proteinO.I.H.G.S.X.
0.4458.10.85Os08g05634009636.m04584-Conserved hypothetical protein8e-2At2g31310LBD14 (LOB DOMAIN-CONTAINING PROTEIN 14)O.I.H.G.S.X.
0.4458.10.85Os07g0684900AK073232.1-Homeobox domain containing protein4e-2At5g17810WOX12 (WUSCHEL related homeobox 12)O.I.H.G.S.X.
0.4458.10.87Os06g0166500AK102541.1-AUX/IAA protein family protein2e-1At2g23120-O.I.H.G.S.X.
0.4051.10.80Os09g0457800AK101358.1--5e-2At4g25000AMY1 (ALPHA-AMYLASE-LIKE)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.799.6GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
18.599.0GSM116399Seedling_IAA treated_rep1GSE5167Rice seedling hormone treatmentLink to GEO
17.298.8GSM116402Seedling_BAP treated_rep2GSE5167Rice seedling hormone treatmentLink to GEO
12.198.3GSM431928Root- -Fe+P biological rep2GSE17245Transcriptome analysis of iron and phosphorus interaction in rice seedlingsLink to GEO
11.398.2GSM431927Root- -Fe+P biological rep1GSE17245Transcriptome analysis of iron and phosphorus interaction in rice seedlingsLink to GEO
9.297.9GSM116195Seedling_Control_rep1GSE5167Rice seedling hormone treatmentLink to GEO
8.897.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
6.997.3GSM302920root_rep1GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
5.796.9GSM304394Stable transgenic rice line (1)GSE12069Mycroarray analyses reveal that plant mutagenesis may induce more transcriptomic changes than transgene insertionLink to GEO
5.696.9GSM278855KT95-418-non-infected, biological rep3GSE11025Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infectionLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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