CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0755400

Gene name
Homology with Arabidopsis Similar to At1g22910: RNA recognition motif (RRM)-containing protein (HF=1e-4)

Module size 6 genes

NF 0.25

%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.1 0.87 Os02g0755400 AK106338.1 - RNA recognition motif-containing protein SEB-4 1e-4 At1g22910 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.57 77.0 0.88 Os02g0712700 9630.m04699 - Legume lectin, beta domain containing protein 3e-4 At5g06740 lectin protein kinase family protein O.I. H.G. S.X.
0.29 31.1 0.91 Os04g0652700 AK106059.1 - Nuclease I 6e-1 At2g37000 TCP family transcription factor, putative O.I. H.G. S.X.
0.25 24.1 0.87 Os07g0176400 C22382 - Conserved hypothetical protein 2e+0 At5g55570 unknown protein O.I. H.G. S.X.
0.25 24.1 0.89 Os10g0208600 AK068630.1 - Viral coat and capsid protein family protein 5e-1 At1g11700 unknown protein O.I. H.G. S.X.
0.13 8.2 0.86 Os03g0183000 AK060527.1 - AP2 domain containing protein RAP2.6 (Fragment) 6e-4 At1g43160 RAP2.6 (related to AP2 6) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.3 98.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.1 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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