CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0753900

Gene name
Homology with Arabidopsis Similar to At5g15820: zinc finger (C3HC4-type RING finger) family protein (HF=6e-2)

Module size 6 genes

NF 0.66

%ile 89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.91 Os02g0753900 9630.m05091 - Conserved hypothetical protein 6e-2 At5g15820 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.80 94.6 0.92 Os07g0507500 AK100690.1 - Hypothetical protein 3e-1 At2g01080 - O.I. H.G. S.X.
0.71 89.6 0.88 Os03g0212300 AK070861.1 - Transcriptional factor B3 family protein 7e-1 At1g64370 unknown protein O.I. H.G. S.X.
0.63 82.7 0.91 Os01g0122000 AK109465.1 - TRAF-like domain containing protein 8e-1 At5g18748 unknown protein O.I. H.G. S.X.
0.56 76.3 0.89 Os08g0554100 AK120710.1 - Rhamnogalacturonate lyase family protein 2e-5 At4g24430 lyase O.I. H.G. S.X.
0.40 51.1 0.88 Os08g0220400 AK106909.1 - Pectinesterase family protein 2e-1 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.6 96.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.2 96.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
4.1 96.0 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
3.9 95.8 GSM195221 Ovary 1, biological rep 1 GSE7951 Genome-wide gene expression profiling of rice stigma
3.4 95.2 GSM195218 stigma 1, biological rep1 GSE7951 Genome-wide gene expression profiling of rice stigma
3.4 95.2 GSM195223 Ovary 3, biological rep 3 GSE7951 Genome-wide gene expression profiling of rice stigma
3.1 94.8 GSM195220 stigma 3, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
3.0 94.6 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
2.8 94.3 GSM195219 stigma 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma
2.8 94.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.080 1 GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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