CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0753200

Gene name
Homology with Arabidopsis Similar to At5g64160: unknown protein (HF=6e-10)

Module size 8 genes

NF 0.27

%ile 27.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.95 Os02g0753200 AK067176.1 - Conserved hypothetical protein 6e-10 At5g64160 unknown protein O.I. H.G. S.X.
0.47 62.3 0.96 Os06g0618300 AK067443.1 - Hypothetical protein 2e+0 At5g53530 VPS26A (VACUOLAR PROTEIN SORTING 26A) O.I. H.G. S.X.
0.33 38.8 0.96 Os02g0495900 9630.m02799 - Conserved hypothetical protein 1e+0 At3g01990 ACR6 O.I. H.G. S.X.
0.31 34.5 0.96 Os01g0264800 AK059509.1 - Breast carcinoma amplified sequence 2 familyprotein 2e-1 At5g53680 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.24 22.4 0.96 Os10g0324600 AK066144.1 - Zn-finger, U1-like domain containing protein 2e-1 At4g12540 unknown protein O.I. H.G. S.X.
0.20 16.5 0.96 Os03g0174100 CR293263 - RNA Binding Protein 45 1e+0 At3g02700 NC domain-containing protein O.I. H.G. S.X.
0.16 11.3 0.96 Os11g0497000 AK111924.1 - Ubiquitin activating enzyme 1e-2 At4g24940 SAE1A (SUMO-ACTIVATING ENZYME 1A) O.I. H.G. S.X.
0.15 10.3 0.96 Os02g0602500 AK064340.1 - Isy1-like splicing family protein 5e-8 At3g18790 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.7 99.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.6 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.7 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.2 97.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM195222 Ovary 2, biological rep 2 GSE7951 Genome-wide gene expression profiling of rice stigma

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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