CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0752800

Gene name
Homology with Arabidopsis Similar to At2g22200: AP2 domain-containing transcription factor (HF=7e-5)

Module size 6 genes

NF 0.19

%ile 16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.93 Os02g0752800 AK105877.1 - Dehydration responsive element binding protein 2B(DREB2B protein) 7e-5 At2g22200 AP2 domain-containing transcription factor O.I. H.G. S.X.
0.50 68.0 0.94 Os01g0595400 AK068184.1 - Protein of unknown function DUF538 family protein 4e-1 At2g30560 glycine-rich protein O.I. H.G. S.X.
0.36 44.0 0.95 Os05g0533700 9633.m04288 - NADH-ubiquinone oxidoreductase subunit PSST(Fragment) 2e-47 At5g11770 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial O.I. H.G. S.X.
0.33 38.8 0.94 Os04g0556300 AY100689.1 - Glutathione peroxidase-like protein GPX54Hv 3e-33 At4g11600 ATGPX6 (GLUTATHIONE PEROXIDASE 6) O.I. H.G. S.X.
0.16 11.3 0.94 Os07g0462700 AK104968.1 - Thioesterase superfamily domain containing protein 2e+0 At2g20920 unknown protein O.I. H.G. S.X.
0.06 3.0 0.93 Os03g0826600 AK101187.1 - Phosphoesterase family protein 8e-11 At1g07230 hydrolase, acting on ester bonds O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.0 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
8.4 97.7 GSM195229 Endosperm GSE7951 Genome-wide gene expression profiling of rice stigma
7.5 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.200 1 GO:0006120 The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I.
0.057 1 GO:0006812 The directed movement of cations, atoms or small molecules with a net positive charge, into, out of, within or between cells.
0.028 1 GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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