CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0750100

Gene name
Homology with Arabidopsis Similar to At1g47265: unknown protein (HF=4e+0)

Module size 7 genes

NF 0.65

%ile 87.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.97 Os02g0750100 BI809899 - H(+)-transporting ATP synthase (EC 3.6.1.34)(Fragment) 4e+0 At1g47265 unknown protein O.I. H.G. S.X.
0.80 94.6 0.97 Os04g0459500 AK071685.1 - GADPH (383 AA) (Fragment) 6e-11 At1g12900 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) O.I. H.G. S.X.
0.75 91.9 0.97 Os06g0608700 AK064989.1 - Fructose-bisphosphate aldolase, class-I familyprotein 1e-36 At4g26530 fructose-bisphosphate aldolase, putative O.I. H.G. S.X.
0.71 89.6 0.98 Os03g0129300 CB644543 - Glyceraldehyde-3-phosphate dehydrogenase (EC1.2.1.13) (Fragment) 2e-29 At1g42970 GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT) O.I. H.G. S.X.
0.56 76.3 0.98 Os10g0492300 AK120231.1 - IAP100 1e+0 At4g35295 homoserine kinase, putative / HSK, putative O.I. H.G. S.X.
0.55 73.7 0.99 Os02g0698000 CB652033 - Phosphoribulokinase, chloroplast precursor (EC2.7.1.19) (Phosphopentokinase) (PRKASE) (PRK) 1e-32 At1g32060 PRK (PHOSPHORIBULOKINASE) O.I. H.G. S.X.
0.39 48.3 0.98 Os05g0496200 AK062214.1 - - 1e-73 At1g56190 phosphoglycerate kinase, putative O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.3 97.5 GSM302915 emb6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
6.0 97.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
5.8 97.0 GSM302914 emb6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
5.1 96.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0 96.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.5 96.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.0 95.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.9 95.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.9 95.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.128 3 GO:0006096 The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle.
0.015 1 GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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