CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0736400

Gene name
Homology with Arabidopsis Similar to At3g17810: dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein (HF=4e-24)

Module size 6 genes

NF 0.54

%ile 72.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 0.83 Os02g0736400 AK065229.1 - Dihydroorotate dehydrogenase family protein 4e-24 At3g17810 dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein O.I. H.G. S.X.
0.67 87.2 0.86 Os05g0595100 AB087745.1 - UDP-glucose 4-epimerase 1e-11 At4g23920 UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2) O.I. H.G. S.X.
0.56 76.3 0.83 Os01g0511100 AK070914.1 - Universal stress protein (Usp) family protein 2e-3 At1g68300 universal stress protein (USP) family protein O.I. H.G. S.X.
0.50 68.0 0.86 Os02g0191300 AK069748.1 - Amino acid/polyamine transporter II family protein 4e-9 At5g38820 amino acid transporter family protein O.I. H.G. S.X.
0.40 51.1 0.87 Os12g0478200 AK063578.1 - GRAM domain containing protein 4e-4 At5g23360 GRAM domain-containing protein / ABA-responsive protein-related O.I. H.G. S.X.
0.31 34.5 0.85 Os07g0245100 AK100710.1 - Nitrogen fixation protein 8e-48 At5g28050 cytidine/deoxycytidylate deaminase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
56.6 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
14.6 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.200 1 GO:0006207 The chemical reactions and pathways resulting in the formation of pyrimidine bases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
0.042 1 GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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