Co-expression analysis

Gene ID Os02g0713700
Gene name
Homology with ArabidopsisSimilar to At5g03240: UBQ3 (POLYUBIQUITIN 3) (HF=3e+0)
Module size 9 genes
NF 0.31
%ile 32.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4355.40.80Os02g07137009630.m04710-Protein of unknown function DUF296 domaincontaining protein3e+0At5g03240UBQ3 (POLYUBIQUITIN 3)O.I.H.G.S.X.
0.5371.30.88Os08g05333009636.m04276-Amino acid-binding ACT domain containing protein3e-3At5g65890ACR1 (ACT Domain Repeat 1)O.I.H.G.S.X.
0.5371.30.87Os09g0486700AK105294.1-Nonphototropic hypocotyl protein 1 (EC 2.7.1.37)(Phototropin)6e-5At3g20830protein kinase family proteinO.I.H.G.S.X.
0.5068.00.87Os06g0714600AU223447-Ras GTPase family protein1e-2At3g46830ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)O.I.H.G.S.X.
0.4253.90.84Os05g0581900AK109090.1-Conserved hypothetical protein6e-4At4g26830catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsO.I.H.G.S.X.
0.3745.00.87Os08g01670009636.m00636-ABC transporter related domain containing protein2e-8At1g31770ABC transporter family proteinO.I.H.G.S.X.
0.3440.00.86Os06g0691800AK065392.1--1e-4At2g47060serine/threonine protein kinase, putativeO.I.H.G.S.X.
0.3032.70.89Os09g0423400AK072133.1-Biopterin transport-related protein BT1 familyprotein3e-4At5g10820integral membrane transporter family proteinO.I.H.G.S.X.
0.105.70.84Os05g0405600CF321959-Cytochrome P450 family protein8e+0Atcg00560-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.199.4GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
13.898.5GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
12.698.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.398.3GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.898.1GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.898.1GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.798.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.598.1GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.998.0GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.597.9GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0341GO:0007264Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.Link to AmiGO
0.0281GO:0015031The directed movement of proteins into, out of, within or between cells.Link to AmiGO
0.0201GO:0006886The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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