Co-expression analysis

Gene ID Os02g0711900
Gene name
Homology with ArabidopsisSimilar to At3g17130: invertase/pectin methylesterase inhibitor family protein (HF=6e+0)
Module size 6 genes
NF 0.08
%ile 5.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5978.00.90Os02g0711900BM038288-Conserved hypothetical protein6e+0At3g17130invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.2931.10.90Os01g0723100AK059087.1-Senescence-associated family protein5e-2At1g30475-O.I.H.G.S.X.
0.073.70.90Os01g0191300AK061716.1-No apical meristem (NAM) protein domain containingprotein1e-5At4g29230anac075 (Arabidopsis NAC domain containing protein 75)O.I.H.G.S.X.
0.073.70.90Os01g0106600AK061314.1-Chitin-binding lectin 1 precursor (PL-I)8e-3At1g30475-O.I.H.G.S.X.
0.042.00.90Os01g0802100AK067589.1-4-diphosphocytidyl-2-C-methyl-D-erythritol kinase,chloroplast precursor (EC 2.7.1.148) (CMK)(4-(cytidine-5'-diphospho)-2-C-methyl- D-erythritolkinase) (CDPMEK)4e-15At2g26930ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE)O.I.H.G.S.X.
0.031.40.89Os01g0880400AK066678.1-Protein of unknown function DUF231 domaincontaining protein3e-1At3g54260unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.199.9GSM195224Suspension cellGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
4.996.5GSM149410Rice Azucena 1ppm Arsenate Rep3GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
4.796.4GSM100446Rice Bala 1ppm Arsenate Rep2GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
4.296.0GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
4.095.9GSM278847WuYun3-non-infected, biological rep1GSE11025Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infectionLink to GEO
3.995.8GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
3.995.8GSM267999Green leaves in F9G RILs from parents linesGSE10872Molecular characterization and genetic analysis reveal SA0420 as an early senescing rice mutant with pleotropic Link to GEO
3.695.5GSM409422Nipponbare_young panicle 2cm, biological rep2GSE16265SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChipLink to GEO
3.495.2GSM100445Rice Bala 1ppm Arsenate Rep1GSE4471Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenateLink to GEO
3.395.1GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.1251GO:0016114The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage