CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0687900

Gene name
Homology with Arabidopsis Similar to At3g12203: scpl17 (serine carboxypeptidase-like 17) (HF=4e-6)

Module size 7 genes

NF 0.30

%ile 31.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 0.82 Os02g0687900 AK064814.1 - Peptidase S10, serine carboxypeptidase familyprotein 4e-6 At3g12203 scpl17 (serine carboxypeptidase-like 17) O.I. H.G. S.X.
0.53 71.3 0.81 Os03g0399900 AK099576.1 - GOS9 protein 7e+0 At4g03290 calcium-binding protein, putative O.I. H.G. S.X.
0.35 41.7 0.82 Os04g0457500 AU075570 - Gamma-glutamyltranspeptidase family protein 7e+0 At4g12380 unknown protein O.I. H.G. S.X.
0.33 38.8 0.86 Os06g0601500 CA764046 - ab initio prediction with EST support 1e-9 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) O.I. H.G. S.X.
0.28 31.1 0.81 Os09g0426800 AK120227.1 - Gl1 protein 3e-1 At4g12950 - O.I. H.G. S.X.
0.17 12.6 0.85 Os06g0288200 AK071127.1 - Hypothetical protein 8e-1 At2g47400 CP12-1 O.I. H.G. S.X.
0.15 10.3 0.83 Os07g0510400 AK119544.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 2e-1 At4g15550 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.8 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.1 98.7 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.3 98.7 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5 98.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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