CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0679200

Gene name
Homology with Arabidopsis Similar to At5g54580: RNA recognition motif (RRM)-containing protein (HF=8e-1)

Module size 7 genes

NF 0.21

%ile 19.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.95 Os02g0679200 AK110789.1 - TPR-like domain containing protein 8e-1 At5g54580 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.33 38.8 0.98 Os11g0587100 9639.m03410 - TPR-like domain containing protein 3e-1 At2g36980 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.27 27.5 0.98 Os10g0479200 NM_197022.1 - Protein prenyltransferase domain containingprotein 1e+0 At5g25220 KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) O.I. H.G. S.X.
0.25 24.1 0.97 Os02g0292600 AK106688.1 - Lipolytic enzyme, G-D-S-L family protein 1e-2 At1g74460 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.18 13.7 0.97 Os01g0260000 AK108460.1 - Protein prenyltransferase domain containingprotein 2e-6 At5g56310 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.13 8.2 0.97 Os06g0530700 AK058455.1 - contains InterPro domain(s): IPR006677 5e-8 At5g60230 SEN2 (splicing endonuclease 2) O.I. H.G. S.X.
0.12 7.2 0.97 Os08g0434000 AK119426.1 - Protein prenyltransferase domain containingprotein 4e-1 At5g40405 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.6 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.4 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.4 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0006388 Splicing of tRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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