CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0679101

Gene name
Homology with Arabidopsis Similar to At5g54580: RNA recognition motif (RRM)-containing protein (HF=1e+0)

Module size 19 genes

NF 0.43

%ile 53.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.92 99.1 0.99 Os02g0679101 9630.m04421 - - 1e+0 At5g54580 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.57 77.0 0.99 Os01g0319500 9629.m02075 - - 8e-2 At2g30560 glycine-rich protein O.I. H.G. S.X.
0.53 71.3 0.99 Os07g0198900 9635.m00966 - - 2e-1 At5g23405 high mobility group (HMG1/2) family protein O.I. H.G. S.X.
0.53 71.3 0.99 Os03g0163800 9631.m00609 - - 5e-1 At5g42635 glycine-rich protein O.I. H.G. S.X.
0.50 68.0 0.99 Os10g0349500 NM_195928.1 - - 6e+0 At4g02610 tryptophan synthase, alpha subunit, putative O.I. H.G. S.X.
0.46 60.9 0.99 Os08g0388400 9636.m02971 - - 4e+0 At5g04010 unknown protein O.I. H.G. S.X.
0.45 58.8 0.98 Os07g0579500 9635.m03900 - - 1e+1 At5g06020 self-incompatibility protein-related O.I. H.G. S.X.
0.42 53.9 0.99 Os07g0480500 NM_187318.1 - - 2e+0 At1g49500 unknown protein O.I. H.G. S.X.
0.41 52.4 0.98 Os02g0295300 9630.m01840 - - 6e+0 At5g61530 small G protein family protein / RhoGAP family protein O.I. H.G. S.X.
0.40 51.1 0.99 Os05g0234400 9633.m01264 - - 1e+0 At1g06380 ribosomal protein-related O.I. H.G. S.X.
0.38 46.9 0.99 Os12g0426300 9640.m02265 - - 1e+0 At3g44380 - O.I. H.G. S.X.
0.37 45.0 0.99 Os09g0399501 9637.m02011 - - 1e+0 At1g01730 unknown protein O.I. H.G. S.X.
0.36 44.0 0.99 Os06g0558501 9634.m03450 - - 2e+0 At1g53285 unknown protein O.I. H.G. S.X.
0.34 40.0 0.99 Os07g0547100 NM_185720.1 - - 7e-1 At3g30768 unknown protein O.I. H.G. S.X.
0.34 40.0 0.99 Os03g0652600 9631.m04349 - - 3e-4 At5g18230 transcription regulator NOT2/NOT3/NOT5 family protein O.I. H.G. S.X.
0.33 38.8 0.99 Os07g0585400 NM_187008.1 - - 8e+0 At5g42655 - O.I. H.G. S.X.
0.30 32.7 0.99 Os01g0786700 NM_190834.1 - Conserved hypothetical protein 1e+1 At5g47870 unknown protein O.I. H.G. S.X.
0.29 31.1 0.99 Os09g0487800 9637.m02772 - Hypothetical protein 4e+0 At4g33740 unknown protein O.I. H.G. S.X.
0.22 19.4 0.99 Os07g0410600 NM_187805.1 - - 1e+0 At2g46400 WRKY46 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.92	99.1	0.99	Os02g0679101	9630.m04421	-	-	1e+0	At5g54580	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.57	77.0	0.99	Os01g0319500	9629.m02075	-	-	8e-2	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.
0.53	71.3	0.99	Os07g0198900	9635.m00966	-	-	2e-1	At5g23405	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.
0.53	71.3	0.99	Os03g0163800	9631.m00609	-	-	5e-1	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os10g0349500	NM_195928.1	-	-	6e+0	At4g02610	tryptophan synthase, alpha subunit, putative	O.I.	H.G.	S.X.
0.46	60.9	0.99	Os08g0388400	9636.m02971	-	-	4e+0	At5g04010	unknown protein	O.I.	H.G.	S.X.
0.45	58.8	0.98	Os07g0579500	9635.m03900	-	-	1e+1	At5g06020	self-incompatibility protein-related	O.I.	H.G.	S.X.
0.42	53.9	0.99	Os07g0480500	NM_187318.1	-	-	2e+0	At1g49500	unknown protein	O.I.	H.G.	S.X.
0.41	52.4	0.98	Os02g0295300	9630.m01840	-	-	6e+0	At5g61530	small G protein family protein / RhoGAP family protein	O.I.	H.G.	S.X.
0.40	51.1	0.99	Os05g0234400	9633.m01264	-	-	1e+0	At1g06380	ribosomal protein-related	O.I.	H.G.	S.X.
0.38	46.9	0.99	Os12g0426300	9640.m02265	-	-	1e+0	At3g44380	-	O.I.	H.G.	S.X.
0.37	45.0	0.99	Os09g0399501	9637.m02011	-	-	1e+0	At1g01730	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os06g0558501	9634.m03450	-	-	2e+0	At1g53285	unknown protein	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os07g0547100	NM_185720.1	-	-	7e-1	At3g30768	unknown protein	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os03g0652600	9631.m04349	-	-	3e-4	At5g18230	transcription regulator NOT2/NOT3/NOT5 family protein	O.I.	H.G.	S.X.
0.33	38.8	0.99	Os07g0585400	NM_187008.1	-	-	8e+0	At5g42655	-	O.I.	H.G.	S.X.
0.30	32.7	0.99	Os01g0786700	NM_190834.1	-	Conserved hypothetical protein	1e+1	At5g47870	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.99	Os09g0487800	9637.m02772	-	Hypothetical protein	4e+0	At4g33740	unknown protein	O.I.	H.G.	S.X.
0.22	19.4	0.99	Os07g0410600	NM_187805.1	-	-	1e+0	At2g46400	WRKY46	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
27.9 99.6 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.2 99.4 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.1 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.4 98.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
27.9	99.6	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
24.2	99.4	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
18.1	98.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0	98.8	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.0	98.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.4	98.8	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3	98.8	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.9	98.7	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5	98.7	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5	98.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os02g0679101
Gene name
Homology with Arabidopsis	Similar to At5g54580: RNA recognition motif (RRM)-containing protein (HF=1e+0)
Module size	19 genes
NF	0.43
%ile	53.2

Co-expression analysis

Gene ID Os02g0679101 Gene name Homology with ArabidopsisSimilar to At5g54580: RNA recognition motif (RRM)-containing protein (HF=1e+0) Module size 19 genes NF 0.43 %ile 53.2

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os02g0679101

Gene name
Homology with Arabidopsis Similar to At5g54580: RNA recognition motif (RRM)-containing protein (HF=1e+0)

Module size 19 genes

NF 0.43

%ile 53.2

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays