CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0678300

Gene name
Homology with Arabidopsis Similar to At1g12570: glucose-methanol-choline (GMC) oxidoreductase family protein (HF=7e-2)

Module size 10 genes

NF 0.47

%ile 60.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 91.9 0.99 Os02g0678300 9630.m04415 - Glucose-methanol-choline oxidoreductase domaincontaining protein 7e-2 At1g12570 glucose-methanol-choline (GMC) oxidoreductase family protein O.I. H.G. S.X.
0.60 79.7 0.99 Os06g0506700 9634.m02986 - - 7e-2 At3g50550 unknown protein O.I. H.G. S.X.
0.59 78.0 0.99 Os09g0324200 AK109621.1 - Cyclin-like F-box domain containing protein 3e+0 At1g68360 zinc finger protein-related O.I. H.G. S.X.
0.50 68.0 0.99 Os03g0593800 NM_190952.1 - - 2e+0 At5g39220 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.48 63.7 0.99 Os01g0267701 NM_188023.1 - - 5e-1 At3g52550 - O.I. H.G. S.X.
0.47 62.3 0.99 Os05g0506400 9633.m04001 - Hypothetical protein 4e+0 At5g55750 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.46 60.9 0.99 Os02g0132900 9630.m00302 - - 2e+0 At1g68725 AGP19 (ARABINOGALACTAN-PROTEIN 19) O.I. H.G. S.X.
0.46 60.9 0.99 Os01g0646900 NM_192328.1 - - 1e+1 At5g03944 unknown protein O.I. H.G. S.X.
0.35 41.7 0.99 Os04g0318700 9638.m00476 - - 1e+0 At1g02405 proline-rich family protein O.I. H.G. S.X.
0.22 19.4 0.99 Os05g0291200 9633.m01978 - - 5e-3 At4g32030 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.2 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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