CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0655600

Gene name
Homology with Arabidopsis Similar to At5g51180: unknown protein (HF=6e-5)

Module size 6 genes

NF 0.41

%ile 50.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.90 Os02g0655600 AK101560.1 - Protein of unknown function DUF676 domaincontaining protein 6e-5 At5g51180 unknown protein O.I. H.G. S.X.
0.50 68.0 0.93 Os08g0424200 AK060716.1 - Methylcrotonyl-CoA carboxylase beta chain,mitochondrial precursor (EC 6.4.1.4)(3-Methylcrotonyl-CoA carboxylase 2) (MCCase betasubunit) (3-methylcrotonyl-CoA:carbon dioxide ligase betasubunit) 2e-26 At4g34030 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE) O.I. H.G. S.X.
0.47 62.3 0.90 Os10g0516300 CB620164 - Electron transfer flavoprotein-ubiquinoneoxidoreductase, mitochondrial precursor (EC 1.5.5.1)(ETF-QO) (ETF-ubiquinone oxidoreductase) (ETFdehydrogenase) (Electron-transferring- flavoproteindehydrogenase). Splice isoform 2 8e-17 At2g43400 ETFQO (electron-transfer flavoprotein:ubiquinone oxidoreductase) O.I. H.G. S.X.
0.33 38.8 0.91 Os12g0605800 AK121511.1 - Methylcrotonyl-CoA carboxylase alpha chain,mitochondrial precursor (EC 6.4.1.4)(3-Methylcrotonyl-CoA carboxylase 1) (MCCase alphasubunit) (3-methylcrotonyl-CoA:carbon dioxide ligasealpha subunit) 2e-15 At1g03090 MCCA O.I. H.G. S.X.
0.27 27.5 0.90 Os04g0382300 AK101795.1 - CBS domain containing protein 4e-6 At3g48530 KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1) O.I. H.G. S.X.
0.22 19.4 0.90 Os01g0159400 CB656566 - Acyl-CoA dehydrogenase family protein 1e-6 At3g51840 ACX4 (ACYL-COA OXIDASE 4) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.2 98.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
8.4 97.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.4 97.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.8 97.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.6 96.9 GSM387561 Transgenic line 22, biological rep. 3 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice
5.0 96.6 GSM387559 Transgenic line 22, biological rep. 1 GSE15448 Glycinebetaine-induced water-stress tolerance in codA-expressing transgenic indica rice

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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