Co-expression analysis

Gene ID Os02g0649900
Gene name
Homology with ArabidopsisSimilar to At5g24380: YSL2 (YELLOW STRIPE LIKE 2) (HF=2e-5)
Module size 6 genes
NF 0.51
%ile 67.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.65Os02g06499009630.m04172-Iron-phytosiderophore transporter protein yellowstripe 12e-5At5g24380YSL2 (YELLOW STRIPE LIKE 2)O.I.H.G.S.X.
0.5068.00.84Os12g0282000AK103636.1-Hypothetical protein8e+0At5g63634unknown proteinO.I.H.G.S.X.
0.4660.90.81Os07g0258400AK103557.1-Metal transporter Nramp6 (AtNramp6)2e-8At1g80830NRAMP1 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 1)O.I.H.G.S.X.
0.4458.10.69Os09g01296009637.m00266-Site-specific recombinase family protein9e-1At2g46610arginine/serine-rich splicing factor, putativeO.I.H.G.S.X.
0.4458.10.83Os01g0871600AK103248.1-TGF-beta receptor, type I/II extracellular regionfamily protein2e-1At5g07730unknown proteinO.I.H.G.S.X.
0.3846.90.65Os03g0751100BU673383--5e-28At4g16370ATOPT3 (OLIGOPEPTIDE TRANSPORTER)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.499.1GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
10.698.1GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.597.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.097.4GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.797.3GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.797.3GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.197.1GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.997.0GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.796.9GSM302920root_rep1GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
5.696.9GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0341GO:0006857The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.Link to AmiGO
0.0211GO:0006310Any process by which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage