Co-expression analysis

Gene ID Os02g0644000
Gene name
Homology with ArabidopsisSimilar to At1g62710: BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) (HF=2e-23)
Module size 17 genes
NF 0.79
%ile 97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.70.88Os02g0644000AB081464.1-C13 endopeptidase NP1 (Fragment)2e-23At1g62710BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)O.I.H.G.S.X.
0.9499.40.93Os01g0702500AY333185.1-Dehydrin RAB253e-5At3g50980XERO1 (DEHYDRIN XERO 1)O.I.H.G.S.X.
0.8996.90.92Os04g0510900AK063625.1-Embryo-specific protein 1 (ATS1)9e+0At1g23240caleosin-related family proteinO.I.H.G.S.X.
0.8996.90.92Os05g0569500AF049892.1--6e-10At1g05510-O.I.H.G.S.X.
0.8896.80.94Os03g0277500AK063650.1-Glyoxalase/bleomycin resistanceprotein/dioxygenase domain containing protein2e+1At4g38260unknown proteinO.I.H.G.S.X.
0.8896.80.93Os08g0127900U25968.1-Globulin 1 (Fragment)4e+0At3g55790unknown proteinO.I.H.G.S.X.
0.8696.40.90Os09g0109600AK063582.1-Conserved hypothetical protein1e+0At3g57500unknown proteinO.I.H.G.S.X.
0.7993.60.93Os01g03033009629.m01932-Mitochondrial import inner membrane translocase,subunit Tim17/22 family protein5e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.7993.60.92Os05g0349800AK063677.1-Embryonic abundant protein 17e-3At3g51810EM1 (LATE EMBRYOGENESIS ABUNDANT 1)O.I.H.G.S.X.
0.7893.40.90Os03g0197300AK102651.1-RmlC-like cupin family protein7e-2At5g37200zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.7893.40.91Os05g0140800AK110652.1-Glucose/ribitol dehydrogenase family protein7e-1At3g05260short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.7391.10.90Os06g0324400AK063726.1-Late embryogenesis abundant (LEA) group 1 familyprotein1e+0At5g49600unknown proteinO.I.H.G.S.X.
0.7289.80.91Os08g0327700AK107930.1-Late embryogenesis abundant (LEA) group 1 familyprotein2e+0At3g15340PPI2 (proton pump interactor 2)O.I.H.G.S.X.
0.6987.90.91Os11g0582400AF516927.1-Hypothetical protein2e-1At5g25020unknown proteinO.I.H.G.S.X.
0.6787.20.90Os03g0159600AK106743.1-Rab28 protein1e+1At3g14200DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.6382.70.94Os03g0663800AK105347.1--8e-3At1g58420-O.I.H.G.S.X.
0.5978.00.90Os03g0842900AK107425.1-Short-chain dehydrogenase/reductase SDR familyprotein3e-3At3g47350short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.598.6GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.597.9GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.597.9GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.397.9GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.497.7GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.397.7GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2002GO:0009790The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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