CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0644000

Gene name
Homology with Arabidopsis Similar to At1g62710: BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) (HF=2e-23)

Module size 17 genes

NF 0.79

%ile 97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.88 Os02g0644000 AB081464.1 - C13 endopeptidase NP1 (Fragment) 2e-23 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) O.I. H.G. S.X.
0.94 99.4 0.93 Os01g0702500 AY333185.1 - Dehydrin RAB25 3e-5 At3g50980 XERO1 (DEHYDRIN XERO 1) O.I. H.G. S.X.
0.89 96.9 0.92 Os04g0510900 AK063625.1 - Embryo-specific protein 1 (ATS1) 9e+0 At1g23240 caleosin-related family protein O.I. H.G. S.X.
0.89 96.9 0.92 Os05g0569500 AF049892.1 - - 6e-10 At1g05510 - O.I. H.G. S.X.
0.88 96.8 0.94 Os03g0277500 AK063650.1 - Glyoxalase/bleomycin resistanceprotein/dioxygenase domain containing protein 2e+1 At4g38260 unknown protein O.I. H.G. S.X.
0.88 96.8 0.93 Os08g0127900 U25968.1 - Globulin 1 (Fragment) 4e+0 At3g55790 unknown protein O.I. H.G. S.X.
0.86 96.4 0.90 Os09g0109600 AK063582.1 - Conserved hypothetical protein 1e+0 At3g57500 unknown protein O.I. H.G. S.X.
0.79 93.6 0.93 Os01g0303300 9629.m01932 - Mitochondrial import inner membrane translocase,subunit Tim17/22 family protein 5e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.79 93.6 0.92 Os05g0349800 AK063677.1 - Embryonic abundant protein 1 7e-3 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) O.I. H.G. S.X.
0.78 93.4 0.90 Os03g0197300 AK102651.1 - RmlC-like cupin family protein 7e-2 At5g37200 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.78 93.4 0.91 Os05g0140800 AK110652.1 - Glucose/ribitol dehydrogenase family protein 7e-1 At3g05260 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.73 91.1 0.90 Os06g0324400 AK063726.1 - Late embryogenesis abundant (LEA) group 1 familyprotein 1e+0 At5g49600 unknown protein O.I. H.G. S.X.
0.72 89.8 0.91 Os08g0327700 AK107930.1 - Late embryogenesis abundant (LEA) group 1 familyprotein 2e+0 At3g15340 PPI2 (proton pump interactor 2) O.I. H.G. S.X.
0.69 87.9 0.91 Os11g0582400 AF516927.1 - Hypothetical protein 2e-1 At5g25020 unknown protein O.I. H.G. S.X.
0.67 87.2 0.90 Os03g0159600 AK106743.1 - Rab28 protein 1e+1 At3g14200 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.63 82.7 0.94 Os03g0663800 AK105347.1 - - 8e-3 At1g58420 - O.I. H.G. S.X.
0.59 78.0 0.90 Os03g0842900 AK107425.1 - Short-chain dehydrogenase/reductase SDR familyprotein 3e-3 At3g47350 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.5 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.5 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.200 2 GO:0009790 The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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