Co-expression analysis

Gene ID Os02g0640800
Gene name
Homology with ArabidopsisSimilar to At5g17650: glycine/proline-rich protein (HF=1e+0)
Module size 36 genes
NF 0.26
%ile 26.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.84Os02g0640800AK069956.1-(-)-isopiperitenone reductase1e+0At5g17650glycine/proline-rich proteinO.I.H.G.S.X.
0.4253.90.91Os03g0800500AK070229.1--2e-1At1g78410VQ motif-containing proteinO.I.H.G.S.X.
0.4051.10.91Os10g0509200AU070802-PAP fibrillin family protein5e+0At1g69330zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3846.90.90Os11g0546300AK121962.1-Patatin family protein3e-9At1g33270patatin-relatedO.I.H.G.S.X.
0.3846.90.86Os06g07313009634.m05013-Surface protein from Gram-positive cocci, anchorregion domain containing protein1e+0At5g63150unknown proteinO.I.H.G.S.X.
0.3644.00.91Os02g0816100AK060021.1-HAD-superfamily hydrolase, subfamily IA, variant 1protein2e+0At4g26240unknown proteinO.I.H.G.S.X.
0.3541.70.93Os02g0326000AK102973.1-Conserved hypothetical protein2e-4At3g54290-O.I.H.G.S.X.
0.3440.00.91Os09g0413200AK069925.1-Abortive infection protein family protein7e-5At1g14270CAAX amino terminal protease family proteinO.I.H.G.S.X.
0.3134.50.93Os08g0332700AK067028.1-Trans-acting transcriptional protein ICP0(Immediate-early protein IE110) (VMW110) (Alpha-0protein)2e-2At1g64430-O.I.H.G.S.X.
0.3134.50.88Os04g0391900AK101777.1-Amidohydrolase 2 family protein3e-9At2g35450catalytic/ hydrolaseO.I.H.G.S.X.
0.3134.50.92Os05g0121200AK066388.1-Transmembrane transport protein-like protein4e-9At5g12130PDE149 (PIGMENT DEFECTIVE 149)O.I.H.G.S.X.
0.3032.70.92Os05g0131100AK068008.1-Conserved hypothetical protein1e-8At4g01995unknown proteinO.I.H.G.S.X.
0.2931.10.89Os05g0295200AK073450.1-Abortive infection protein family protein1e+0At3g07390AIR12O.I.H.G.S.X.
0.2831.10.90Os01g0743400AK069114.1-Tryptophanyl-tRNA synthetase (Fragment)1e-14At2g25840OVA4 (ovule abortion 4)O.I.H.G.S.X.
0.2831.10.91Os09g0130800AK066693.1-DEAD/DEAH box helicase domain containing protein2e-6At5g35970DNA-binding protein, putativeO.I.H.G.S.X.
0.2831.10.93Os05g0200100AK061208.1-Thioredoxin-related domain containing protein3e-30At4g29670thioredoxin family proteinO.I.H.G.S.X.
0.2831.10.88Os06g0484500AK108194.1-Hypothetical protein6e+0At2g01340unknown proteinO.I.H.G.S.X.
0.2625.60.91Os10g0370700NM_196115.1-Nitrate transporter (Fragment)5e-2At1g62200proton-dependent oligopeptide transport (POT) family proteinO.I.H.G.S.X.
0.2625.60.91Os10g0545100CA765892-Conserved hypothetical protein3e-5At3g10405unknown proteinO.I.H.G.S.X.
0.2625.60.91Os07g0545900CR290805-TPR-like domain containing protein2e-1At1g0283060S ribosomal protein L22 (RPL22A)O.I.H.G.S.X.
0.2524.10.92Os04g0422000AK106080.1-PAP fibrillin family protein3e+0At1g21000zinc-binding family proteinO.I.H.G.S.X.
0.2524.10.95Os09g0109800AK059327.1-Conserved hypothetical protein2e-54At3g19490ATNHD1O.I.H.G.S.X.
0.2321.20.93Os03g0163300AK103418.1-Glutathione reductase (Fragment)2e-8At3g54660GR (GLUTATHIONE REDUCTASE)O.I.H.G.S.X.
0.2321.20.94Os01g0764500AK120433.1-Hypothetical protein2e-1At2g11910unknown proteinO.I.H.G.S.X.
0.2117.90.91Os01g0218700AK064992.1-Sugar transporter superfamily protein2e-15At1g54350ABC transporter family proteinO.I.H.G.S.X.
0.1915.10.91Os06g0152800AK099578.1-Conserved hypothetical protein7e-1At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)O.I.H.G.S.X.
0.1915.10.89Os10g0503200AU088655-Dihydrofolate synthetase /folylpolyglutamatesynthetase2e-5At5g05980ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B)O.I.H.G.S.X.
0.1915.10.92Os01g0715000AK120627.1-The start codon is not identified.6e-8At5g20220zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.1915.10.92Os03g0684000AK105025.2-Zn-finger, GATA type domain containing protein1e-2At3g21175ZML1 (ZIM-LIKE 1)O.I.H.G.S.X.
0.1813.70.89Os07g0576000AK072012.1-Homogentisic acid geranylgeranyl transferase5e-18At3g11945homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferaseO.I.H.G.S.X.
0.1813.70.91Os12g0103000AK068622.1-Mitochondrial substrate carrier family protein3e-16At2g35800mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.1813.70.94Os02g0804500AK068801.1-DnaJ protein5e-18At1g80030DNAJ heat shock protein, putativeO.I.H.G.S.X.
0.1611.30.89Os01g0704700NM_191637.1-Chloride channel protein CLC-e (AtCLC-e)4e-3At4g35440CLC-E (CHLORIDE CHANNEL E)O.I.H.G.S.X.
0.1611.30.90Os12g0564400AK059949.1-Thylakoid lumenal 21.5 kDa protein, chloroplastprecursor1e-10At4g15510photosystem II reaction center PsbP family proteinO.I.H.G.S.X.
0.1510.30.91Os07g0607800AK069010.1-Conserved hypothetical protein6e-2At4g26110NAP1O.I.H.G.S.X.
0.149.30.91Os02g0573200AB024337.1-Cryptochrome 16e-6At4g08920CRY1 (CRYPTOCHROME 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.199.7GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
20.799.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
13.898.5GSM195227AntherGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
10.798.1GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.898.0GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.297.9GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.197.9GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.997.8GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.597.7GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0541GO:0006436The process of coupling tryptophan to tryptophanyl-tRNA, catalyzed by tryptophanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.Link to AmiGO
0.0481GO:0009396The chemical reactions and pathways resulting in the formation of folic acid and its derivatives.Link to AmiGO
0.0271GO:0006281The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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