CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0626400

Gene name
Homology with Arabidopsis Similar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=1e-19)

Module size 7 genes

NF 0.51

%ile 67.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 0.92 Os02g0626400 BI807677 - Phenylalanine ammonia-lyase (EC 4.3.1.5) 1e-19 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) O.I. H.G. S.X.
0.55 73.7 0.94 Os04g0338000 AA754007 - IN2-2 protein 4e-1 At5g35300 unknown protein O.I. H.G. S.X.
0.55 73.7 0.95 Os08g0157500 AK064768.1 - Caffeic acid 3-O-methyltransferase (EC 2.1.1.68)(S-adenosysl-L- methionine:caffeic acid3-O-methyltransferase) (COMT) (CAOMT) 2e-7 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) O.I. H.G. S.X.
0.53 71.3 0.94 Os02g0626100 AK121303.1 - Phenylalanine ammonia-lyase (EC 4.3.1.5) 4e+0 At2g03430 ankyrin repeat family protein O.I. H.G. S.X.
0.44 58.1 0.95 Os08g0498100 AB110168.1 - Caffeoyl-CoA O-methyltransferase 2 (EC 2.1.1.104)(Trans-caffeoyl-CoA 3-O-methyltransferase 2) (CCoAMT-2)(CCoAOMT-2) 2e+0 At3g54000 - O.I. H.G. S.X.
0.42 53.9 0.94 Os06g0175500 AK058599.1 - Epsin, N-terminal domain containing protein 8e-11 At5g35200 epsin N-terminal homology (ENTH) domain-containing protein O.I. H.G. S.X.
0.33 38.8 0.95 Os03g0815200 AK099527.1 - Methylenetetrahydrofolate reductase (EC 1.5.1.20) 3e-44 At2g44160 MTHFR2 (METHYLENETETRAHYDROFOLATE REDUCTASE 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.1 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.2 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.8 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0006555 The chemical reactions and pathways involving methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins.
0.054 1 GO:0015986 The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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