Co-expression analysis

Gene ID Os02g0620600
Gene name
Homology with ArabidopsisSimilar to At4g13510: AMT1 (HF=2e-17)
Module size 21 genes
NF 0.54
%ile 73.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7591.90.83Os02g0620600AK107204.1-Rh-like protein/ammonium transporter familyprotein2e-17At4g13510AMT1O.I.H.G.S.X.
0.8094.60.90Os07g01930009635.m00915-HIPL1 protein precursor3e-1At5g62630HIPL2 (HIPL2 PROTEIN PRECURSOR)O.I.H.G.S.X.
0.6281.50.88Os09g02935009637.m00942-BRASSINOSTEROID INSENSITIVE 1 precursor (EC2.7.1.37) (AtBRI1) (Brassinosteroid LRR receptor kinase)9e-15At3g13380BRL3 (BRI1-LIKE 3)O.I.H.G.S.X.
0.6181.20.86Os08g0245200AK069932.1-4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1)3e-10At3g212404CL2 (4-COUMARATE:COA LIGASE 2)O.I.H.G.S.X.
0.6181.20.86Os09g0447500AK110565.1-Cytochrome P450 family protein6e-2At1g13110CYP71B7O.I.H.G.S.X.
0.5877.00.90Os07g0421300AK121014.1-Glycoside hydrolase, family 31 protein7e-15At3g23640HGL1 (heteroglycan glucosidase 1)O.I.H.G.S.X.
0.5676.30.87Os01g0248900AK111100.1-Expansin EXPA55e-10At2g37640EXP3O.I.H.G.S.X.
0.5676.30.89Os01g0678800AK062840.1-Heavy metal transport/detoxification proteindomain containing protein3e-1At1g20220nucleic acid bindingO.I.H.G.S.X.
0.5573.70.88Os02g08208009630.m05730-Protein of unknown function DUF296 domaincontaining protein3e-2At4g14465DNA-binding protein-relatedO.I.H.G.S.X.
0.5471.90.90Os04g0684300AK105205.1-Hypothetical protein2e+1Atcg00560-O.I.H.G.S.X.
0.5269.60.89Os10g0193100CA755860-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein1e+0At2g22800HAT9O.I.H.G.S.X.
0.5168.70.89Os04g0423800AK108989.1-Peroxidase precursor (EC 1.11.1.7)3e-3At1g44970peroxidase, putativeO.I.H.G.S.X.
0.5068.00.90Os03g0216700AK101556.1-Multi antimicrobial extrusion protein MatE familyprotein2e-2At5g65160tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.4863.70.92Os09g0280500AK106988.1-Basic-leucine zipper (bZIP) transcription factordomain containing protein7e-2At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)O.I.H.G.S.X.
0.4863.70.88Os10g0323500AK071372.1-Beta-glucosidase1e-6At1g26560BGLU40 (BETA GLUCOSIDASE 40)O.I.H.G.S.X.
0.4660.90.88Os03g0245500AK064707.1-Curculin-like (mannose-binding) lectin domaincontaining protein1e+1At5g53560CB5-E (CYTOCHROME B5 ISOFORM E)O.I.H.G.S.X.
0.4458.10.89Os12g0639200AK122160.1-AAA ATPase, central region domain containingprotein4e-3At4g05380AAA-type ATPase family proteinO.I.H.G.S.X.
0.4355.40.88Os08g0477500AU033142-S.tuberosum patatin (Fragment)2e+0At1g28280VQ motif-containing proteinO.I.H.G.S.X.
0.4253.90.87Os10g0555700U95968.1-Major pollen allergen Lol pI family protein3e+0At2g44310calcium-binding EF hand family proteinO.I.H.G.S.X.
0.4152.40.88Os05g0276500U30479.1-Expansin Os-EXPA35e-1At2g39700ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)O.I.H.G.S.X.
0.3541.70.92Os01g0218100AK068593.1-Basic helix-loop-helix dimerisation region bHLHdomain containing protein1e+0At5g24890unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.599.8GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
32.099.7GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
8.397.7GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.897.6GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.697.5GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.597.5GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.297.4GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.197.4GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.097.4GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.997.3GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0871GO:0015696The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.Link to AmiGO
0.0311GO:0006418The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.Link to AmiGO
0.0191GO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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