CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0620500

Gene name
Homology with Arabidopsis Similar to At1g64780: ATAMT1 (HF=3e-19)

Module size 34 genes

NF 0.42

%ile 52.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 96.8 0.70 Os02g0620500 9630.m03934 - High affinity ammonium transporter 3e-19 At1g64780 ATAMT1 O.I. H.G. S.X.
0.64 83.4 0.77 Os01g0704100 AK109776.1 - - 2e-5 At1g12940 ATNRT2.5 (nitrate transporter2.5) O.I. H.G. S.X.
0.60 79.7 0.85 Os02g0820800 9630.m05730 - Protein of unknown function DUF296 domaincontaining protein 3e-2 At4g14465 DNA-binding protein-related O.I. H.G. S.X.
0.56 76.3 0.85 Os10g0193100 CA755860 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 1e+0 At2g22800 HAT9 O.I. H.G. S.X.
0.53 71.3 0.84 Os08g0476900 AK101432.1 - Patatin-like protein 1 3e+0 At4g37060 PLP5 (PATATIN-LIKE PROTEIN 5) O.I. H.G. S.X.
0.52 69.6 0.85 Os07g0193000 9635.m00915 - HIPL1 protein precursor 3e-1 At5g62630 HIPL2 (HIPL2 PROTEIN PRECURSOR) O.I. H.G. S.X.
0.51 68.7 0.84 Os09g0447500 AK110565.1 - Cytochrome P450 family protein 6e-2 At1g13110 CYP71B7 O.I. H.G. S.X.
0.51 68.7 0.89 Os01g0678800 AK062840.1 - Heavy metal transport/detoxification proteindomain containing protein 3e-1 At1g20220 nucleic acid binding O.I. H.G. S.X.
0.50 68.0 0.81 Os11g0151500 AK102457.1 - Major facilitator superfamily protein 2e-1 At5g28440 unknown protein O.I. H.G. S.X.
0.49 64.4 0.88 Os05g0489900 AK070533.1 - Calcium/calmodulin-dependent protein kinase 2e-5 At4g09570 CPK4 O.I. H.G. S.X.
0.47 62.3 0.88 Os12g0183200 9640.m00762 - 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)(3'(2'),5- bisphosphonucleoside 3'(2')-phosphohydrolase)(DPNPase) 3e-2 At5g63990 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative O.I. H.G. S.X.
0.45 58.8 0.89 Os12g0639200 AK122160.1 - AAA ATPase, central region domain containingprotein 4e-3 At4g05380 AAA-type ATPase family protein O.I. H.G. S.X.
0.45 58.8 0.81 Os02g0620600 AK107204.1 - Rh-like protein/ammonium transporter familyprotein 2e-17 At4g13510 AMT1 O.I. H.G. S.X.
0.45 58.8 0.86 Os09g0293500 9637.m00942 - BRASSINOSTEROID INSENSITIVE 1 precursor (EC2.7.1.37) (AtBRI1) (Brassinosteroid LRR receptor kinase) 9e-15 At3g13380 BRL3 (BRI1-LIKE 3) O.I. H.G. S.X.
0.43 55.4 0.82 Os01g0248900 AK111100.1 - Expansin EXPA5 5e-10 At2g37640 EXP3 O.I. H.G. S.X.
0.41 52.4 0.80 Os03g0667500 AB070226.1 - Iron-regulated transporter 1 2e-10 At1g31260 ZIP10 (ZINC TRANSPORTER 10 PRECURSOR) O.I. H.G. S.X.
0.41 52.4 0.85 Os05g0278500 AK067851.1 - Transferase family protein 2e-1 At1g06980 unknown protein O.I. H.G. S.X.
0.40 51.1 0.83 Os05g0586500 AK106883.1 - Amino acid/polyamine transporter II family protein 9e-7 At5g41800 amino acid transporter family protein O.I. H.G. S.X.
0.40 51.1 0.83 Os07g0618400 AK111671.1 - Protein kinase domain containing protein 4e-4 At3g13065 SRF4 (STRUBBELIG-RECEPTOR FAMILY 4) O.I. H.G. S.X.
0.39 48.3 0.82 Os02g0650300 AK063464.1 - Oligopeptide transporter OPT superfamily protein 4e-9 At4g24120 YSL1 (YELLOW STRIPE LIKE 1) O.I. H.G. S.X.
0.39 48.3 0.86 Os08g0245200 AK069932.1 - 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1) 3e-10 At3g21240 4CL2 (4-COUMARATE:COA LIGASE 2) O.I. H.G. S.X.
0.37 45.0 0.88 Os05g0596500 AK070817.1 - Zn-finger, RING domain containing protein 7e-1 At5g63480 unknown protein O.I. H.G. S.X.
0.36 44.0 0.83 Os02g0706900 AK059034.1 - Alpha/beta hydrolase family protein 1e-2 At4g36610 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.35 41.7 0.84 Os03g0626700 AK068484.1 - Multi antimicrobial extrusion protein MatE familyprotein 1e-6 At3g21690 MATE efflux family protein O.I. H.G. S.X.
0.34 40.0 0.82 Os05g0280500 AK111471.1 - Phospholipid/glycerol acyltransferase familyprotein 2e-8 At2g38110 GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6) O.I. H.G. S.X.
0.33 38.8 0.85 Os01g0291500 AK070443.1 - Transferase family protein 9e-4 At3g62160 transferase family protein O.I. H.G. S.X.
0.33 38.8 0.85 Os11g0152700 AK102690.1 - Transcription factor HBP-1b(C38) (Fragment) 3e-1 At1g77920 bZIP family transcription factor O.I. H.G. S.X.
0.32 36.3 0.83 Os03g0762300 AK058884.1 - - 6e-1 At2g24800 peroxidase, putative O.I. H.G. S.X.
0.32 36.3 0.88 Os10g0390600 AK107029.1 - 1-aminocyclopropane-1-carboxylate synthase familyprotein 4e-7 At1g72330 ALAAT2 (ALANINE AMINOTRANSFERASE 2) O.I. H.G. S.X.
0.31 34.5 0.82 Os05g0245300 AB091471.1 - Protein of unknown function DUF588 family protein 7e+0 Atcg00790 - O.I. H.G. S.X.
0.30 32.7 0.83 Os09g0280500 AK106988.1 - Basic-leucine zipper (bZIP) transcription factordomain containing protein 7e-2 At3g12250 TGA6 (TGACG MOTIF-BINDING FACTOR 6) O.I. H.G. S.X.
0.30 32.7 0.85 Os08g0108700 9636.m00070 - Conserved hypothetical protein 9e-2 At3g21260 glycolipid transfer protein-related O.I. H.G. S.X.
0.27 27.5 0.84 Os06g0192400 AK108798.1 - Glycosyl transferase, family 31 protein 4e-2 At5g47550 cysteine protease inhibitor, putative / cystatin, putative O.I. H.G. S.X.
0.26 25.6 0.84 Os06g0691800 AK065392.1 - - 1e-4 At2g47060 serine/threonine protein kinase, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.88	96.8	0.70	Os02g0620500	9630.m03934	-	High affinity ammonium transporter	3e-19	At1g64780	ATAMT1	O.I.	H.G.	S.X.
0.64	83.4	0.77	Os01g0704100	AK109776.1	-	-	2e-5	At1g12940	ATNRT2.5 (nitrate transporter2.5)	O.I.	H.G.	S.X.
0.60	79.7	0.85	Os02g0820800	9630.m05730	-	Protein of unknown function DUF296 domaincontaining protein	3e-2	At4g14465	DNA-binding protein-related	O.I.	H.G.	S.X.
0.56	76.3	0.85	Os10g0193100	CA755860	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	1e+0	At2g22800	HAT9	O.I.	H.G.	S.X.
0.53	71.3	0.84	Os08g0476900	AK101432.1	-	Patatin-like protein 1	3e+0	At4g37060	PLP5 (PATATIN-LIKE PROTEIN 5)	O.I.	H.G.	S.X.
0.52	69.6	0.85	Os07g0193000	9635.m00915	-	HIPL1 protein precursor	3e-1	At5g62630	HIPL2 (HIPL2 PROTEIN PRECURSOR)	O.I.	H.G.	S.X.
0.51	68.7	0.84	Os09g0447500	AK110565.1	-	Cytochrome P450 family protein	6e-2	At1g13110	CYP71B7	O.I.	H.G.	S.X.
0.51	68.7	0.89	Os01g0678800	AK062840.1	-	Heavy metal transport/detoxification proteindomain containing protein	3e-1	At1g20220	nucleic acid binding	O.I.	H.G.	S.X.
0.50	68.0	0.81	Os11g0151500	AK102457.1	-	Major facilitator superfamily protein	2e-1	At5g28440	unknown protein	O.I.	H.G.	S.X.
0.49	64.4	0.88	Os05g0489900	AK070533.1	-	Calcium/calmodulin-dependent protein kinase	2e-5	At4g09570	CPK4	O.I.	H.G.	S.X.
0.47	62.3	0.88	Os12g0183200	9640.m00762	-	3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)(3'(2'),5- bisphosphonucleoside 3'(2')-phosphohydrolase)(DPNPase)	3e-2	At5g63990	3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative	O.I.	H.G.	S.X.
0.45	58.8	0.89	Os12g0639200	AK122160.1	-	AAA ATPase, central region domain containingprotein	4e-3	At4g05380	AAA-type ATPase family protein	O.I.	H.G.	S.X.
0.45	58.8	0.81	Os02g0620600	AK107204.1	-	Rh-like protein/ammonium transporter familyprotein	2e-17	At4g13510	AMT1	O.I.	H.G.	S.X.
0.45	58.8	0.86	Os09g0293500	9637.m00942	-	BRASSINOSTEROID INSENSITIVE 1 precursor (EC2.7.1.37) (AtBRI1) (Brassinosteroid LRR receptor kinase)	9e-15	At3g13380	BRL3 (BRI1-LIKE 3)	O.I.	H.G.	S.X.
0.43	55.4	0.82	Os01g0248900	AK111100.1	-	Expansin EXPA5	5e-10	At2g37640	EXP3	O.I.	H.G.	S.X.
0.41	52.4	0.80	Os03g0667500	AB070226.1	-	Iron-regulated transporter 1	2e-10	At1g31260	ZIP10 (ZINC TRANSPORTER 10 PRECURSOR)	O.I.	H.G.	S.X.
0.41	52.4	0.85	Os05g0278500	AK067851.1	-	Transferase family protein	2e-1	At1g06980	unknown protein	O.I.	H.G.	S.X.
0.40	51.1	0.83	Os05g0586500	AK106883.1	-	Amino acid/polyamine transporter II family protein	9e-7	At5g41800	amino acid transporter family protein	O.I.	H.G.	S.X.
0.40	51.1	0.83	Os07g0618400	AK111671.1	-	Protein kinase domain containing protein	4e-4	At3g13065	SRF4 (STRUBBELIG-RECEPTOR FAMILY 4)	O.I.	H.G.	S.X.
0.39	48.3	0.82	Os02g0650300	AK063464.1	-	Oligopeptide transporter OPT superfamily protein	4e-9	At4g24120	YSL1 (YELLOW STRIPE LIKE 1)	O.I.	H.G.	S.X.
0.39	48.3	0.86	Os08g0245200	AK069932.1	-	4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)(4-coumaroyl-CoA synthase 1)	3e-10	At3g21240	4CL2 (4-COUMARATE:COA LIGASE 2)	O.I.	H.G.	S.X.
0.37	45.0	0.88	Os05g0596500	AK070817.1	-	Zn-finger, RING domain containing protein	7e-1	At5g63480	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.83	Os02g0706900	AK059034.1	-	Alpha/beta hydrolase family protein	1e-2	At4g36610	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.35	41.7	0.84	Os03g0626700	AK068484.1	-	Multi antimicrobial extrusion protein MatE familyprotein	1e-6	At3g21690	MATE efflux family protein	O.I.	H.G.	S.X.
0.34	40.0	0.82	Os05g0280500	AK111471.1	-	Phospholipid/glycerol acyltransferase familyprotein	2e-8	At2g38110	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	O.I.	H.G.	S.X.
0.33	38.8	0.85	Os01g0291500	AK070443.1	-	Transferase family protein	9e-4	At3g62160	transferase family protein	O.I.	H.G.	S.X.
0.33	38.8	0.85	Os11g0152700	AK102690.1	-	Transcription factor HBP-1b(C38) (Fragment)	3e-1	At1g77920	bZIP family transcription factor	O.I.	H.G.	S.X.
0.32	36.3	0.83	Os03g0762300	AK058884.1	-	-	6e-1	At2g24800	peroxidase, putative	O.I.	H.G.	S.X.
0.32	36.3	0.88	Os10g0390600	AK107029.1	-	1-aminocyclopropane-1-carboxylate synthase familyprotein	4e-7	At1g72330	ALAAT2 (ALANINE AMINOTRANSFERASE 2)	O.I.	H.G.	S.X.
0.31	34.5	0.82	Os05g0245300	AB091471.1	-	Protein of unknown function DUF588 family protein	7e+0	Atcg00790	-	O.I.	H.G.	S.X.
0.30	32.7	0.83	Os09g0280500	AK106988.1	-	Basic-leucine zipper (bZIP) transcription factordomain containing protein	7e-2	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	O.I.	H.G.	S.X.
0.30	32.7	0.85	Os08g0108700	9636.m00070	-	Conserved hypothetical protein	9e-2	At3g21260	glycolipid transfer protein-related	O.I.	H.G.	S.X.
0.27	27.5	0.84	Os06g0192400	AK108798.1	-	Glycosyl transferase, family 31 protein	4e-2	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.
0.26	25.6	0.84	Os06g0691800	AK065392.1	-	-	1e-4	At2g47060	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
30.6 99.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.9 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.0 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
30.6	99.7	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
21.9	99.3	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.0	98.0	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9	97.8	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7	97.8	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.056 1 GO:0015696 The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
0.054 1 GO:0009826 The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
0.053 1 GO:0009741 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus.

SF	Genes	GO ID	Process Name
0.056	1	GO:0015696	The directed movement of ammonium into, out of, within or between cells. Ammonium is the cation NH4+ which is formed from N2 by root-nodule bacteria in leguminous plants and is an excretory product in ammonotelic animals.
0.054	1	GO:0009826	The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
0.053	1	GO:0009741	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Os02g0620500
Gene name
Homology with Arabidopsis	Similar to At1g64780: ATAMT1 (HF=3e-19)
Module size	34 genes
NF	0.42
%ile	52.2

Co-expression analysis

Gene ID Os02g0620500 Gene name Homology with ArabidopsisSimilar to At1g64780: ATAMT1 (HF=3e-19) Module size 34 genes NF 0.42 %ile 52.2

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os02g0620500

Gene name
Homology with Arabidopsis Similar to At1g64780: ATAMT1 (HF=3e-19)

Module size 34 genes

NF 0.42

%ile 52.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays