CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0617400

Gene name
Homology with Arabidopsis Similar to At3g04290: LTL1 (LI-TOLERANT LIPASE 1) (HF=1e-2)

Module size 9 genes

NF 0.47

%ile 60.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.87 Os02g0617400 AK108108.1 - Lipolytic enzyme, G-D-S-L family protein 1e-2 At3g04290 LTL1 (LI-TOLERANT LIPASE 1) O.I. H.G. S.X.
0.63 82.7 0.89 Os01g0753800 AK121555.1 - Conserved hypothetical protein 3e+0 At5g47640 NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2) O.I. H.G. S.X.
0.50 68.0 0.86 Os06g0604000 AK061163.1 - Ethylene response factor 3 2e-10 At1g15360 SHN1 (SHINE 1) O.I. H.G. S.X.
0.50 68.0 0.88 Os11g0456000 AK121173.1 - Rapid ALkalinization Factor family protein 5e-3 At1g58420 - O.I. H.G. S.X.
0.50 68.0 0.93 Os01g0652000 NM_192389.1 - - 1e-3 At4g18570 proline-rich family protein O.I. H.G. S.X.
0.50 68.0 0.94 Os07g0565800 AK062834.1 - Conserved hypothetical protein 2e+0 At3g25577 unknown protein O.I. H.G. S.X.
0.48 63.7 0.90 Os01g0814100 AK061173.1 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 5e-1 At2g14170 ALDH6B2 O.I. H.G. S.X.
0.38 46.9 0.89 Os03g0844600 AK108050.1 - Lipolytic enzyme, G-D-S-L family protein 5e-7 At3g26020 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative O.I. H.G. S.X.
0.20 16.5 0.89 Os11g0558300 AK109777.1 - - 8e-11 At1g49430 LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.5 97.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.1 97.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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