CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0615400

Gene name
Homology with Arabidopsis Similar to At1g25370: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.06

%ile 4.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.38 46.9 0.66 Os02g0615400 9630.m03879 - Leucine-rich repeat, plant specific containingprotein 2e+0 At1g25370 unknown protein O.I. H.G. S.X.
0.16 11.3 0.71 Os09g0304800 CB681576 - Conserved hypothetical protein 2e+0 At4g35320 unknown protein O.I. H.G. S.X.
0.05 2.5 0.69 Os09g0380600 AK063655.1 - Conserved hypothetical protein 1e+1 At5g67070 RALFL34 (ralf-like 34) O.I. H.G. S.X.
0.04 2.0 0.74 Os09g0354900 AK069410.1 - Conserved hypothetical protein 1e-2 At3g50550 unknown protein O.I. H.G. S.X.
0.04 2.0 0.73 Os07g0541700 AK105128.1 - Receptor-like protein kinase 5 5e-4 At4g23260 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase O.I. H.G. S.X.
0.03 1.4 0.73 Os11g0626700 AK120168.1 - Hypothetical protein 1e+1 At5g05500 pollen Ole e 1 allergen and extensin family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
86.3 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
84.6 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.2 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1621970_at, orthologous to the query gene, Os02g0615400

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 95.1 1621970_at At1g25370 hypothetical protein LOC100243642 - 9e-2 At3g58210 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.
0.74 91.0 1614806_s_at At1g25370 hypothetical protein LOC100264507 - 2e-4 At2g25000 WRKY60 O.I. H.G. S.X.
0.73 90.8 1610949_s_at At1g25370 hypothetical protein LOC100247492 - 2e+0 At1g01490 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.69 88.3 1622399_at At1g25370 similar to DNA-binding protein - 2e-27 At4g31550 WRKY11 O.I. H.G. S.X.
0.65 85.0 1611285_s_at At1g25370 similar to DNA-binding protein - 3e-22 At4g31550 WRKY11 O.I. H.G. S.X.
0.65 85.0 1616557_s_at At1g25370 hypothetical protein LOC100252599 - 3e-2 At1g01490 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.65 85.0 1614461_s_at At1g25370 hypothetical protein LOC100252599 /// hypothetical LOC100254334 - 3e-1 At5g24770 VSP2 (VEGETATIVE STORAGE PROTEIN 2) O.I. H.G. S.X.
0.61 83.2 1609265_at At1g25370 hypothetical protein LOC100255460 - 5e-2 At3g60530 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.56 79.4 1611550_at At1g25370 hypothetical protein LOC100263619 - 2e-9 At4g11070 WRKY41 O.I. H.G. S.X.
0.55 77.3 1617358_s_at At1g25370 hypothetical protein LOC100246286 /// hypothetical LOC100254879 /// hypothetical protein LOC100258299 /// hypothetical protein LOC100258874 /// hypothetical protein LOC100264041 /// hypothetical protein LOC100265184 - 2e+0 At2g45650 AGL6 (AGAMOUS-LIKE 6) O.I. H.G. S.X.
0.50 72.7 1610064_at At1g25370 similar to DNA-binding protein - 3e-19 At2g38470 WRKY33 O.I. H.G. S.X.
0.41 58.7 1614505_s_at At1g25370 similar to At1g61340 - 2e-3 At1g61340 F-box family protein O.I. H.G. S.X.
0.39 54.9 1606793_at At1g25370 hypothetical protein LOC100255095 - 1e+0 At1g29850 double-stranded DNA-binding family protein O.I. H.G. S.X.
0.38 53.6 1615596_s_at At1g25370 hypothetical protein LOC100264822 - 1e-4 At2g36320 zinc finger (AN1-like) family protein O.I. H.G. S.X.
0.35 48.5 1613186_at At1g25370 hypothetical protein LOC100264822 - 1e-4 At2g36320 zinc finger (AN1-like) family protein O.I. H.G. S.X.
0.35 48.5 1616198_at At1g25370 hypothetical protein LOC100242144 - 1e-7 At1g28370 ERF11 (ERF DOMAIN PROTEIN 11) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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