CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0615400

Gene name
Homology with Arabidopsis Similar to At1g25370: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.06

%ile 4.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.38 46.9 0.66 Os02g0615400 9630.m03879 - Leucine-rich repeat, plant specific containingprotein 2e+0 At1g25370 unknown protein O.I. H.G. S.X.
0.16 11.3 0.71 Os09g0304800 CB681576 - Conserved hypothetical protein 2e+0 At4g35320 unknown protein O.I. H.G. S.X.
0.05 2.5 0.69 Os09g0380600 AK063655.1 - Conserved hypothetical protein 1e+1 At5g67070 RALFL34 (ralf-like 34) O.I. H.G. S.X.
0.04 2.0 0.74 Os09g0354900 AK069410.1 - Conserved hypothetical protein 1e-2 At3g50550 unknown protein O.I. H.G. S.X.
0.04 2.0 0.73 Os07g0541700 AK105128.1 - Receptor-like protein kinase 5 5e-4 At4g23260 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase O.I. H.G. S.X.
0.03 1.4 0.73 Os11g0626700 AK120168.1 - Hypothetical protein 1e+1 At5g05500 pollen Ole e 1 allergen and extensin family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
86.3 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
84.6 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.2 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.72168.1.A1_at, orthologous to the query gene, Os02g0615400

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 GmaAffx.72168.1.A1_at At1g25370 - - 7e-1 At1g69818 - O.I. H.G. S.X.
0.53 74.2 GmaAffx.66131.1.A1_at At1g25370 - - 2e+0 At2g28090 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.47 66.6 Gma.3902.1.A1_at At1g25370 - - 2e-20 At4g35360 pantothenate kinase family protein O.I. H.G. S.X.
0.33 46.1 Gma.7400.1.S1_a_at At1g25370 asparagine synthetase, type III - 3e-56 At5g65010 ASN2 (ASPARAGINE SYNTHETASE 2) O.I. H.G. S.X.
0.32 43.7 GmaAffx.53254.1.S1_at At1g25370 - - 2e+0 At1g34315 unknown protein O.I. H.G. S.X.
0.31 42.2 GmaAffx.79282.1.S1_at At1g25370 - - 2e+0 At3g47480 calcium-binding EF hand family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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