CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0615400

Gene name
Homology with Arabidopsis Similar to At1g25370: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.06

%ile 4.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.38 46.9 0.66 Os02g0615400 9630.m03879 - Leucine-rich repeat, plant specific containingprotein 2e+0 At1g25370 unknown protein O.I. H.G. S.X.
0.16 11.3 0.71 Os09g0304800 CB681576 - Conserved hypothetical protein 2e+0 At4g35320 unknown protein O.I. H.G. S.X.
0.05 2.5 0.69 Os09g0380600 AK063655.1 - Conserved hypothetical protein 1e+1 At5g67070 RALFL34 (ralf-like 34) O.I. H.G. S.X.
0.04 2.0 0.74 Os09g0354900 AK069410.1 - Conserved hypothetical protein 1e-2 At3g50550 unknown protein O.I. H.G. S.X.
0.04 2.0 0.73 Os07g0541700 AK105128.1 - Receptor-like protein kinase 5 5e-4 At4g23260 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase O.I. H.G. S.X.
0.03 1.4 0.73 Os11g0626700 AK120168.1 - Hypothetical protein 1e+1 At5g05500 pollen Ole e 1 allergen and extensin family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
86.3 100.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
84.6 100.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.2 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g25370, orthologous to the query gene, Os02g0615400

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.23 19.3 At1g25370 839122 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. H.G. S.X.
0.21 15.8 At5g47730 834824 SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative F:transporter activity, binding;P:transport;C:cellular_component unknown;MPFO O.I. H.G. S.X.
0.15 7.8 At4g25030 828606 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBF O.I. H.G. S.X.
0.13 5.8 At1g18890 838470 ATCDPK1 (CALCIUM-DEPENDENT PROTEIN KINASE 1) encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. O.I. H.G. S.X.
0.11 4.1 At5g67350 836870 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. H.G. S.X.
0.09 2.8 At4g37640 829918 ACA2 (CALCIUM ATPASE 2) Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase's with an N-terminal autoinhibitor. O.I. H.G. S.X.
0.07 1.9 At5g18400 831958 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MFOP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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