CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0603500

Gene name
Homology with Arabidopsis Similar to At1g31070: UDP-N-acetylglucosamine pyrophosphorylase-related (HF=3e-3)

Module size 7 genes

NF 0.74

%ile 95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.99 Os02g0603500 NM_186455.1 - - 3e-3 At1g31070 UDP-N-acetylglucosamine pyrophosphorylase-related O.I. H.G. S.X.
0.83 95.8 0.99 Os09g0528300 AK121125.1 - Conserved hypothetical protein 1e-1 At1g26665 - O.I. H.G. S.X.
0.71 89.6 0.98 Os11g0673900 9639.m04180 - NBS-LRR type resistance protein (Fragment) 1e+0 At4g16210 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) O.I. H.G. S.X.
0.71 89.6 0.99 Os12g0425200 9640.m02256 - - 5e+0 At5g04440 unknown protein O.I. H.G. S.X.
0.67 87.2 0.99 Os06g0169933 9634.m00659 - - 1e-2 At4g25410 DNA binding / transcription factor O.I. H.G. S.X.
0.67 87.2 0.99 Os04g0201900 9632.m01129 - Curculin-like (mannose-binding) lectin domaincontaining protein 1e-1 At4g02630 protein kinase family protein O.I. H.G. S.X.
0.59 78.0 0.99 Os10g0375400 NM_196148.1 - - 4e+0 At5g49450 AtbZIP1 (Arabidopsis thaliana basic leucine-zipper 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.0 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.9 99.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.5 97.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8 97.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.0 97.4 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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