CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0591700

Gene name
Homology with Arabidopsis Similar to At1g74060: 60S ribosomal protein L6 (RPL6B) (HF=9e-6)

Module size 22 genes

NF 0.70

%ile 92.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.78 93.4 0.98 Os02g0591700 AK072777.1 - Ribosomal protein L6 (Fragment) 9e-6 At1g74060 60S ribosomal protein L6 (RPL6B) O.I. H.G. S.X.
0.78 93.4 0.98 Os03g0807800 AK064984.1 - 40S ribosomal protein S2 2e-16 At3g57490 40S ribosomal protein S2 (RPS2D) O.I. H.G. S.X.
0.77 93.1 0.98 Os02g0814700 AK121994.1 - 60S ribosomal protein L17 [Oryza sativa (japonicacultivar-group)] 4e-78 At1g04480 60S ribosomal protein L23 (RPL23A) O.I. H.G. S.X.
0.76 92.2 0.98 Os05g0155100 AK120877.1 - 60S ribosomal protein L18 5e-4 At2g47570 60S ribosomal protein L18 (RPL18A) O.I. H.G. S.X.
0.75 91.9 0.98 Os07g0150200 AK121635.1 - 40S ribosomal protein S12 5e-19 At2g32060 40S ribosomal protein S12 (RPS12C) O.I. H.G. S.X.
0.74 91.4 0.98 Os03g0577000 AK061051.1 - 40S ribosomal protein S3 8e-31 At5g35530 40S ribosomal protein S3 (RPS3C) O.I. H.G. S.X.
0.73 91.1 0.98 Os10g0170200 AK121628.1 - Ribosomal protein S10 family protein 4e-16 At5g62300 40S ribosomal protein S20 (RPS20C) O.I. H.G. S.X.
0.72 89.8 0.98 Os11g0127900 L36313.1 - 40S ribosomal protein S16 2e-9 At3g04230 40S ribosomal protein S16 (RPS16B) O.I. H.G. S.X.
0.71 89.6 0.98 Os03g0343500 AB117995.1 - 60S ribosomal protein L22-2 2e-24 At3g05560 60S ribosomal protein L22-2 (RPL22B) O.I. H.G. S.X.
0.71 89.6 0.98 Os01g0815800 AK058612.1 - - 2e-31 At3g53020 STV1 (SHORT VALVE1) O.I. H.G. S.X.
0.71 89.6 0.98 Os12g0167900 D12630.1 - 60S ribosomal protein L3 1e-116 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) O.I. H.G. S.X.
0.69 87.9 0.98 Os07g0208000 AK062943.1 - 40S ribosomal protein S15a 7e-49 At1g07770 RPS15A (ribosomal protein s15a) O.I. H.G. S.X.
0.69 87.9 0.98 Os03g0200500 AU183769 - - 2e-5 At3g04840 40S ribosomal protein S3A (RPS3aA) O.I. H.G. S.X.
0.68 87.5 0.98 Os11g0168200 AK073392.1 - 60S ribosomal protein L3 4e-95 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) O.I. H.G. S.X.
0.68 87.5 0.98 Os01g0205500 AK067763.1 - 60S ribosomal protein L11-2 (L16). Splice isoform2 1e-109 At4g18730 RPL16B O.I. H.G. S.X.
0.67 87.2 0.98 Os04g0398900 CA758176 - Hypothetical protein 5e-25 At3g61110 ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27) O.I. H.G. S.X.
0.67 87.2 0.98 Os03g0141000 AK120267.1 - 60S ribosomal protein L21 5e-21 At1g09690 60S ribosomal protein L21 (RPL21C) O.I. H.G. S.X.
0.62 81.5 0.98 Os04g0430100 AB054123.1 - Plectin/S10, N-terminal domain containing protein 9e-18 At4g25740 40S ribosomal protein S10 (RPS10A) O.I. H.G. S.X.
0.59 78.0 0.98 Os04g0598200 BX897823 - 60S ribosomal protein L12 2e-21 At3g53430 60S ribosomal protein L12 (RPL12B) O.I. H.G. S.X.
0.58 77.0 0.98 Os03g0424500 AK104954.1 - 40S ribosomal protein S19 5e-10 At5g61170 40S ribosomal protein S19 (RPS19C) O.I. H.G. S.X.
0.57 77.0 0.98 Os09g0485900 AK064936.1 - 60S ribosomal protein L9 (Gibberellin-regulatedprotein GA) 5e-23 At1g33140 PGY2 (PIGGYBACK2) O.I. H.G. S.X.
0.53 71.3 0.98 Os01g0679700 AK119702.1 - 60S ribosomal protein L37a 1e-15 At3g10950 60S ribosomal protein L37a (RPL37aB) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.78	93.4	0.98	Os02g0591700	AK072777.1	-	Ribosomal protein L6 (Fragment)	9e-6	At1g74060	60S ribosomal protein L6 (RPL6B)	O.I.	H.G.	S.X.
0.78	93.4	0.98	Os03g0807800	AK064984.1	-	40S ribosomal protein S2	2e-16	At3g57490	40S ribosomal protein S2 (RPS2D)	O.I.	H.G.	S.X.
0.77	93.1	0.98	Os02g0814700	AK121994.1	-	60S ribosomal protein L17 [Oryza sativa (japonicacultivar-group)]	4e-78	At1g04480	60S ribosomal protein L23 (RPL23A)	O.I.	H.G.	S.X.
0.76	92.2	0.98	Os05g0155100	AK120877.1	-	60S ribosomal protein L18	5e-4	At2g47570	60S ribosomal protein L18 (RPL18A)	O.I.	H.G.	S.X.
0.75	91.9	0.98	Os07g0150200	AK121635.1	-	40S ribosomal protein S12	5e-19	At2g32060	40S ribosomal protein S12 (RPS12C)	O.I.	H.G.	S.X.
0.74	91.4	0.98	Os03g0577000	AK061051.1	-	40S ribosomal protein S3	8e-31	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.
0.73	91.1	0.98	Os10g0170200	AK121628.1	-	Ribosomal protein S10 family protein	4e-16	At5g62300	40S ribosomal protein S20 (RPS20C)	O.I.	H.G.	S.X.
0.72	89.8	0.98	Os11g0127900	L36313.1	-	40S ribosomal protein S16	2e-9	At3g04230	40S ribosomal protein S16 (RPS16B)	O.I.	H.G.	S.X.
0.71	89.6	0.98	Os03g0343500	AB117995.1	-	60S ribosomal protein L22-2	2e-24	At3g05560	60S ribosomal protein L22-2 (RPL22B)	O.I.	H.G.	S.X.
0.71	89.6	0.98	Os01g0815800	AK058612.1	-	-	2e-31	At3g53020	STV1 (SHORT VALVE1)	O.I.	H.G.	S.X.
0.71	89.6	0.98	Os12g0167900	D12630.1	-	60S ribosomal protein L3	1e-116	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.
0.69	87.9	0.98	Os07g0208000	AK062943.1	-	40S ribosomal protein S15a	7e-49	At1g07770	RPS15A (ribosomal protein s15a)	O.I.	H.G.	S.X.
0.69	87.9	0.98	Os03g0200500	AU183769	-	-	2e-5	At3g04840	40S ribosomal protein S3A (RPS3aA)	O.I.	H.G.	S.X.
0.68	87.5	0.98	Os11g0168200	AK073392.1	-	60S ribosomal protein L3	4e-95	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.
0.68	87.5	0.98	Os01g0205500	AK067763.1	-	60S ribosomal protein L11-2 (L16). Splice isoform2	1e-109	At4g18730	RPL16B	O.I.	H.G.	S.X.
0.67	87.2	0.98	Os04g0398900	CA758176	-	Hypothetical protein	5e-25	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	O.I.	H.G.	S.X.
0.67	87.2	0.98	Os03g0141000	AK120267.1	-	60S ribosomal protein L21	5e-21	At1g09690	60S ribosomal protein L21 (RPL21C)	O.I.	H.G.	S.X.
0.62	81.5	0.98	Os04g0430100	AB054123.1	-	Plectin/S10, N-terminal domain containing protein	9e-18	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.
0.59	78.0	0.98	Os04g0598200	BX897823	-	60S ribosomal protein L12	2e-21	At3g53430	60S ribosomal protein L12 (RPL12B)	O.I.	H.G.	S.X.
0.58	77.0	0.98	Os03g0424500	AK104954.1	-	40S ribosomal protein S19	5e-10	At5g61170	40S ribosomal protein S19 (RPS19C)	O.I.	H.G.	S.X.
0.57	77.0	0.98	Os09g0485900	AK064936.1	-	60S ribosomal protein L9 (Gibberellin-regulatedprotein GA)	5e-23	At1g33140	PGY2 (PIGGYBACK2)	O.I.	H.G.	S.X.
0.53	71.3	0.98	Os01g0679700	AK119702.1	-	60S ribosomal protein L37a	1e-15	At3g10950	60S ribosomal protein L37a (RPL37aB)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.7 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.3 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.4 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
14.7	98.6	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
12.3	98.3	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2	98.3	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2	98.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2	98.0	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9	98.0	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.4	97.9	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os02g0591700
Gene name
Homology with Arabidopsis	Similar to At1g74060: 60S ribosomal protein L6 (RPL6B) (HF=9e-6)
Module size	22 genes
NF	0.70
%ile	92.4

Co-expression analysis

Gene ID Os02g0591700 Gene name Homology with ArabidopsisSimilar to At1g74060: 60S ribosomal protein L6 (RPL6B) (HF=9e-6) Module size 22 genes NF 0.70 %ile 92.4

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os02g0591700

Gene name
Homology with Arabidopsis Similar to At1g74060: 60S ribosomal protein L6 (RPL6B) (HF=9e-6)

Module size 22 genes

NF 0.70

%ile 92.4

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays