CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0590800

Gene name
Homology with Arabidopsis Similar to At3g20860: ATNEK5 (NIMA-RELATED KINASE5) (HF=1e-12)

Module size 6 genes

NF 0.25

%ile 24.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.93 Os02g0590800 AK060204.1 - Protein kinase domain containing protein 1e-12 At3g20860 ATNEK5 (NIMA-RELATED KINASE5) O.I. H.G. S.X.
0.40 51.1 0.93 Os08g0129700 AB099292.1 - NAD-dependent epimerase/dehydratase family protein 7e-14 At1g30620 MUR4 (MURUS 4) O.I. H.G. S.X.
0.31 34.5 0.94 Os01g0675500 AK069674.1 - Glycoprotein-specificUDP-glucuronyltransferase-like protein 8e-5 At1g27600 glycosyl transferase family 43 protein O.I. H.G. S.X.
0.29 31.1 0.93 Os06g0607000 AK121115.1 - Beta-1,3-glucanase-like protein 1e-3 At2g26600 glycosyl hydrolase family 17 protein O.I. H.G. S.X.
0.25 24.1 0.94 Os02g0637700 AK073849.1 - Zinc-containing alcohol dehydrogenase superfamilyprotein 6e-11 At5g24760 alcohol dehydrogenase, putative O.I. H.G. S.X.
0.11 6.5 0.94 Os04g0433600 AK073390.1 - Protein of unknown function DUF668 family protein 3e-1 At5g08660 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.6 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM409430 9311_young panicle 2cm, biological rep1 GSE16265 SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
10.0 98.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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