CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0586500

Gene name
Homology with Arabidopsis Similar to At4g02840: small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative (HF=7e-12)

Module size 7 genes

NF 0.52

%ile 69.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.98 Os02g0586500 AK101525.1 - Small nuclear ribonucleoprotein Sm D1 (snRNP coreprotein D1) (Sm-D1) (Sm-D autoantigen) 7e-12 At4g02840 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative O.I. H.G. S.X.
0.67 87.2 0.98 Os03g0424200 AK069682.1 - Protein kinase domain containing protein 5e-1 At5g62627 - O.I. H.G. S.X.
0.61 81.2 0.98 Os06g0295500 AK119433.1 - Hypothetical protein 3e-2 At5g66815 unknown protein O.I. H.G. S.X.
0.48 63.7 0.98 Os12g0198500 9640.m00905 - Hypothetical protein 2e+0 At5g66658 unknown protein O.I. H.G. S.X.
0.43 55.4 0.98 Os01g0391500 BI812884 - Conserved hypothetical protein 5e+0 Atmg00270 - O.I. H.G. S.X.
0.38 46.9 0.98 Os04g0478600 AK073788.1 - Conserved hypothetical protein 3e-3 At4g21160 ZAC O.I. H.G. S.X.
0.38 46.9 0.98 Os01g0388500 CF294425 - Conserved hypothetical protein 3e+0 At5g47710 C2 domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.6 99.4 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.5 99.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.1 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.1 99.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.1 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.9 98.6 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.095 1 GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
0.083 1 GO:0008380 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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