Co-expression analysis

Gene ID	Os02g0580400
Gene name
Homology with Arabidopsis	Similar to At1g23220: dynein light chain type 1 family protein (HF=1e-4)
Module size	6 genes
NF	0.29
%ile	30.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	81.2	0.92	Os02g0580400	AK103053.1	-	Dynein light chain, type 1 family protein	1e-4	At1g23220	dynein light chain type 1 family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	0.92	Os03g0769400	AK068827.1	-	Conserved hypothetical protein	7e-2	At3g50780	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.27	27.5	0.92	Os04g0686200	AK121864.1	-	Chromosome condensation regulator protein(Fragment)	2e-15	At5g42140	zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.20	16.5	0.93	Os04g0546300	AK102945.1	-	GMPK2=PROTEIN kinase	3e-45	At2g44830	protein kinase, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	0.93	Os05g0143400	9633.m00447	-	Eukaryotic protein of unknown function DUF873family protein	5e-3	At5g49010	SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.14	9.3	0.93	Os01g0647700	AK100691.1	-	Epoxide hydrolase family protein	2e-5	At1g80280	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.2	96.7	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.0	96.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
4.2	96.0	GSM174887	D FR13 3 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
3.9	95.8	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.6	95.5	GSM174885	B FR13 3 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
3.5	95.3	GSM174888	C mock 3 dpi rep 2 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
3.4	95.2	GSM154829	Root_DMSO-treatment_30min_replicate 1	GSE6719	Cytokinin responsive genes in rice
3.4	95.2	GSM174886	F FR13 4 dpi rep 1 with array type rice from Affymetrix	GSE7256	Identification of rice genes differentially expressed upon virulent infection by Magnaporthe grisea
3.4	95.2	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.3	95.1	GSM421667	XOC, 2 hai - rep1	GSE16793	Comparative transcriptional profiling of rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO
0.167	1	GO:0007017	Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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