CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0566300

Gene name
Homology with Arabidopsis Similar to At1g50760: unknown protein (HF=5e-1)

Module size 6 genes

NF 0.09

%ile 6.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.8 0.94 Os02g0566300 AK073899.1 - Conserved hypothetical protein 5e-1 At1g50760 unknown protein O.I. H.G. S.X.
0.24 22.4 0.93 Os10g0482000 AK063227.1 - Hypothetical protein 1e-1 At1g21390 emb2170 (embryo defective 2170) O.I. H.G. S.X.
0.23 21.2 0.93 Os04g0598900 AK111730.1 - Wall-associated kinase-like protein 3e-4 At1g21210 WAK4 (wall associated kinase 4) O.I. H.G. S.X.
0.17 12.6 0.93 Os01g0864200 NM_190730.1 - Conserved hypothetical protein 4e+0 At5g60810 unknown protein O.I. H.G. S.X.
0.04 2.0 0.94 Os01g0848300 AK120668.1 - TPR-like domain containing protein 2e-6 At1g71420 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.02 1.0 0.94 Os08g0164800 AK120165.1 - RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein 2e+0 At5g17710 EMB1241 (embryo defective 1241) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
43.1 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
38.3 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.3 99.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.0 99.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.8 99.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.5 99.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.2 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.8 98.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.8 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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