CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0562200

Gene name
Homology with Arabidopsis Similar to At5g05120: zinc finger (C2H2 type) family protein (HF=4e+0)

Module size 21 genes

NF 0.52

%ile 69.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.79 93.6 0.96 Os02g0562200 9630.m03375 - - 4e+0 At5g05120 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.68 87.5 0.97 Os06g0170100 9634.m00665 - Protein kinase domain containing protein 3e-7 At1g48210 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.67 87.2 0.97 Os02g0649150 9630.m04166 - - 5e+0 At3g17100 transcription factor O.I. H.G. S.X.
0.64 83.4 0.97 Os11g0648200 9639.m03950 - - 2e+0 At4g11870 unknown protein O.I. H.G. S.X.
0.63 82.7 0.97 Os04g0134300 9632.m00375 - - 2e+0 At5g25420 xanthine/uracil permease family protein O.I. H.G. S.X.
0.58 77.0 0.98 Os04g0347500 9632.m02642 - - 9e-2 At3g21120 F-box family protein O.I. H.G. S.X.
0.57 77.0 0.97 Os01g0509966 NM_193748.1 - - 1e+0 At5g05580 FAD8 (FATTY ACID DESATURASE 8) O.I. H.G. S.X.
0.56 76.3 0.98 Os11g0269700 AK071998.1 - Conserved hypothetical protein 2e+0 At2g47670 invertase/pectin methylesterase inhibitor family protein O.I. H.G. S.X.
0.52 69.6 0.97 Os03g0803200 AK111283.1 - Conserved hypothetical protein 2e-3 At3g28455 CLE25 (CLAVATA3/ESR-RELATED 25) O.I. H.G. S.X.
0.52 69.6 0.98 Os05g0126050 9633.m00277 - - 1e-2 At5g47090 unknown protein O.I. H.G. S.X.
0.49 64.4 0.97 Os12g0196200 9640.m00883 - - 3e+0 At5g06030 self-incompatibility protein-related O.I. H.G. S.X.
0.49 64.4 0.97 Os01g0594700 NM_192609.1 - Conserved hypothetical protein 2e-1 At1g33030 O-methyltransferase family 2 protein O.I. H.G. S.X.
0.48 63.7 0.97 Os02g0121900 AK109567.1 - TPR-like domain containing protein 3e-1 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) O.I. H.G. S.X.
0.48 63.7 0.97 Os06g0165300 9634.m00627 - Hypothetical protein 2e-4 At3g01500 CA1 (CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.47 62.3 0.98 Os12g0165400 9640.m00608 - Hypothetical protein 1e+0 At1g53480 unknown protein O.I. H.G. S.X.
0.44 58.1 0.97 Os04g0552900 9632.m04500 - - 3e-1 At4g30410 transcription factor O.I. H.G. S.X.
0.41 52.4 0.97 Os05g0576850 9633.m04714 - - 1e-1 At2g40510 40S ribosomal protein S26 (RPS26A) O.I. H.G. S.X.
0.41 52.4 0.98 Os02g0126200 9630.m00240 - - 6e-1 At1g54095 unknown protein O.I. H.G. S.X.
0.39 48.3 0.98 Os12g0168600 9640.m00635 - - 3e+0 At4g02890 UBQ14 O.I. H.G. S.X.
0.38 46.9 0.98 Os09g0446400 9637.m02402 - Transposase 2e-1 At2g19480 NAP1 O.I. H.G. S.X.
0.34 40.0 0.98 Os07g0133200 9635.m00340 - - 9e-1 At1g33860 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.79	93.6	0.96	Os02g0562200	9630.m03375	-	-	4e+0	At5g05120	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.
0.68	87.5	0.97	Os06g0170100	9634.m00665	-	Protein kinase domain containing protein	3e-7	At1g48210	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.
0.67	87.2	0.97	Os02g0649150	9630.m04166	-	-	5e+0	At3g17100	transcription factor	O.I.	H.G.	S.X.
0.64	83.4	0.97	Os11g0648200	9639.m03950	-	-	2e+0	At4g11870	unknown protein	O.I.	H.G.	S.X.
0.63	82.7	0.97	Os04g0134300	9632.m00375	-	-	2e+0	At5g25420	xanthine/uracil permease family protein	O.I.	H.G.	S.X.
0.58	77.0	0.98	Os04g0347500	9632.m02642	-	-	9e-2	At3g21120	F-box family protein	O.I.	H.G.	S.X.
0.57	77.0	0.97	Os01g0509966	NM_193748.1	-	-	1e+0	At5g05580	FAD8 (FATTY ACID DESATURASE 8)	O.I.	H.G.	S.X.
0.56	76.3	0.98	Os11g0269700	AK071998.1	-	Conserved hypothetical protein	2e+0	At2g47670	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.52	69.6	0.97	Os03g0803200	AK111283.1	-	Conserved hypothetical protein	2e-3	At3g28455	CLE25 (CLAVATA3/ESR-RELATED 25)	O.I.	H.G.	S.X.
0.52	69.6	0.98	Os05g0126050	9633.m00277	-	-	1e-2	At5g47090	unknown protein	O.I.	H.G.	S.X.
0.49	64.4	0.97	Os12g0196200	9640.m00883	-	-	3e+0	At5g06030	self-incompatibility protein-related	O.I.	H.G.	S.X.
0.49	64.4	0.97	Os01g0594700	NM_192609.1	-	Conserved hypothetical protein	2e-1	At1g33030	O-methyltransferase family 2 protein	O.I.	H.G.	S.X.
0.48	63.7	0.97	Os02g0121900	AK109567.1	-	TPR-like domain containing protein	3e-1	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	O.I.	H.G.	S.X.
0.48	63.7	0.97	Os06g0165300	9634.m00627	-	Hypothetical protein	2e-4	At3g01500	CA1 (CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.
0.47	62.3	0.98	Os12g0165400	9640.m00608	-	Hypothetical protein	1e+0	At1g53480	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.97	Os04g0552900	9632.m04500	-	-	3e-1	At4g30410	transcription factor	O.I.	H.G.	S.X.
0.41	52.4	0.97	Os05g0576850	9633.m04714	-	-	1e-1	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.
0.41	52.4	0.98	Os02g0126200	9630.m00240	-	-	6e-1	At1g54095	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	0.98	Os12g0168600	9640.m00635	-	-	3e+0	At4g02890	UBQ14	O.I.	H.G.	S.X.
0.38	46.9	0.98	Os09g0446400	9637.m02402	-	Transposase	2e-1	At2g19480	NAP1	O.I.	H.G.	S.X.
0.34	40.0	0.98	Os07g0133200	9635.m00340	-	-	9e-1	At1g33860	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
35.1 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
28.5 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
23.1 99.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.9 98.7 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
13.9 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
35.1	99.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
28.5	99.6	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
23.1	99.3	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.9	98.7	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
13.9	98.5	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5	98.5	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8	98.4	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2	98.3	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os02g0562200
Gene name
Homology with Arabidopsis	Similar to At5g05120: zinc finger (C2H2 type) family protein (HF=4e+0)
Module size	21 genes
NF	0.52
%ile	69.8

Co-expression analysis

Gene ID Os02g0562200 Gene name Homology with ArabidopsisSimilar to At5g05120: zinc finger (C2H2 type) family protein (HF=4e+0) Module size 21 genes NF 0.52 %ile 69.8

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os02g0562200

Gene name
Homology with Arabidopsis Similar to At5g05120: zinc finger (C2H2 type) family protein (HF=4e+0)

Module size 21 genes

NF 0.52

%ile 69.8

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays