CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0550600

Gene name
Homology with Arabidopsis Similar to At3g51810: EM1 (LATE EMBRYOGENESIS ABUNDANT 1) (HF=3e+0)

Module size 9 genes

NF 0.17

%ile 14.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.94 99.4 0.94 Os02g0550600 BM421724 - Plant neutral invertase family protein 3e+0 At3g51810 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) O.I. H.G. S.X.
0.36 44.0 0.96 Os07g0584500 AK067725.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 3e-23 At3g07810 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative O.I. H.G. S.X.
0.25 24.1 0.97 Os02g0198600 AK067974.1 - Peptidase aspartic family protein 6e-42 At3g13235 ubiquitin family protein O.I. H.G. S.X.
0.20 16.5 0.97 Os07g0632700 AK060066.1 - contains InterPro domain(s): IPR000348, IPR009038 3e-2 At2g03290 protein transmembrane transporter O.I. H.G. S.X.
0.19 15.1 0.96 Os01g0103600 AK059848.1 - Emopamil-binding family protein 5e-4 At1g20050 HYD1 (HYDRA1) O.I. H.G. S.X.
0.16 11.3 0.97 Os06g0724100 AK066985.1 - Zn-finger, FYVE type domain containing protein 1e-3 At1g20110 zinc finger (FYVE type) family protein O.I. H.G. S.X.
0.13 8.2 0.96 Os06g0115100 AK059160.1 - - 4e+0 At5g66005 Expressed protein O.I. H.G. S.X.
0.10 5.7 0.96 Os01g0587000 AK067605.1 - Vacuolar ATP synthase subunit d (EC 3.6.3.14)(V-ATPase d subunit) (Vacuolar proton pump d subunit)(V-ATPase 41 KDa accessory protein) (DVA41) 2e-75 At3g28710 H+-transporting two-sector ATPase, putative O.I. H.G. S.X.
0.10 5.7 0.95 Os05g0168700 AK065618.1 - Conserved hypothetical protein 6e-42 At1g06890 transporter-related O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.5 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.7 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.0 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.6 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.095 1 GO:0009405 The set of specific processes that generate the ability of an organism to cause disease in another.
0.077 1 GO:0006818 The directed movement of hydrogen (H2 or H+), into, out of, within or between cells.
0.020 1 GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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