CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os02g0542200

Gene name
Homology with Arabidopsis Similar to At3g13224: RNA recognition motif (RRM)-containing protein (HF=1e+0)

Module size 19 genes

NF 0.35

%ile 39.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.81 94.8 0.93 Os02g0542200 CA760509 - FAR1 domain containing protein 1e+0 At3g13224 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.53 71.3 0.95 Os01g0581900 AK068030.1 - Hypothetical protein 9e-2 At4g39410 WRKY13 O.I. H.G. S.X.
0.47 62.3 0.95 Os07g0581300 AK103439.1 - Conserved hypothetical protein 2e-20 At1g45150 unknown protein O.I. H.G. S.X.
0.44 58.1 0.95 Os09g0521900 AK063534.1 - Conserved hypothetical protein 1e+0 At1g01880 DNA repair protein, putative O.I. H.G. S.X.
0.39 48.3 0.95 Os02g0658500 AK107591.1 - Hypothetical protein 5e-1 At5g07670 F-box family protein O.I. H.G. S.X.
0.38 46.9 0.95 Os06g0102900 AK106399.1 - Hypothetical protein 3e-1 At1g51420 SPP1 (SUCROSE-PHOSPHATASE 1) O.I. H.G. S.X.
0.37 45.0 0.94 Os04g0129300 AK109511.1 - YT521-B-like protein family protein 5e-9 At1g55500 ECT4 O.I. H.G. S.X.
0.34 40.0 0.96 Os10g0546200 CA759033 - Conserved hypothetical protein 2e-3 At5g04480 - O.I. H.G. S.X.
0.33 38.8 0.95 Os12g0279100 AK065251.1 - Transcription factor jumonji, JmjN domaincontaining protein 3e-12 At3g48430 REF6 (RELATIVE OF EARLY FLOWERING 6) O.I. H.G. S.X.
0.31 34.5 0.94 Os06g0731100 9634.m05040 - Zn-finger-like, PHD finger domain containingprotein 3e-1 At2g36720 PHD finger transcription factor, putative O.I. H.G. S.X.
0.31 34.5 0.95 Os05g0357700 9633.m02652 - Conserved hypothetical protein 3e+0 At5g49170 unknown protein O.I. H.G. S.X.
0.29 31.1 0.95 Os05g0106000 AK103444.1 - Zn-finger, C2H2 type domain containing protein 3e-3 At4g06634 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.26 25.6 0.96 Os04g0628400 AK066646.1 - BED finger domain containing protein 4e-1 At5g25310 catalytic O.I. H.G. S.X.
0.25 24.1 0.97 Os02g0772500 AK100349.1 - Protein prenyltransferase domain containingprotein 4e-5 At3g17740 unknown protein O.I. H.G. S.X.
0.23 21.2 0.95 Os06g0103900 AK111870.1 - Putative methyltransferase DUF248 family protein 3e-10 At4g10440 dehydration-responsive family protein O.I. H.G. S.X.
0.23 21.2 0.97 Os01g0668300 AK102266.1 - Hypothetical protein 4e-1 At5g50375 CPI1 (CYCLOPROPYL ISOMERASE) O.I. H.G. S.X.
0.22 19.4 0.97 Os01g0655400 AK069873.1 - Hypothetical protein 1e-1 At1g27590 - O.I. H.G. S.X.
0.20 16.5 0.95 Os03g0353500 AK099434.1 - Hypothetical protein 1e-4 At1g54215 proline-rich family protein O.I. H.G. S.X.
0.19 15.1 0.94 Os11g0246100 AK120471.1 - Mitochodrial transcription terminationfactor-related family protein 4e+0 At5g47080 CKB1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.4 99.2 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
12.0 98.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.4 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.8 98.1 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.100 1 GO:0009555 The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates.
0.036 1 GO:0006396 Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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